Protein–RNA interactions for Protein: A6NKF7

TMEM88B, Transmembrane protein 88B, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM88BA6NKF7 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
TMEM88BA6NKF7 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
TMEM88BA6NKF7 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TMEM88BA6NKF7 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC22.31■■□□□ 1.16
TMEM88BA6NKF7 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TMEM88BA6NKF7 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
TMEM88BA6NKF7 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TMEM88BA6NKF7 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TMEM88BA6NKF7 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
TMEM88BA6NKF7 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
TMEM88BA6NKF7 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC22.31■■□□□ 1.16
TMEM88BA6NKF7 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
TMEM88BA6NKF7 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TMEM88BA6NKF7 ERF-202ENST00000440177 2032 ntTSL 2 BASIC22.31■■□□□ 1.16
TMEM88BA6NKF7 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
TMEM88BA6NKF7 PLK5-205ENST00000642079 1969 ntBASIC22.3■■□□□ 1.16
TMEM88BA6NKF7 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
TMEM88BA6NKF7 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC22.3■■□□□ 1.16
TMEM88BA6NKF7 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
TMEM88BA6NKF7 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TMEM88BA6NKF7 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TMEM88BA6NKF7 UPF3AP3-201ENST00000420996 769 ntBASIC22.3■■□□□ 1.16
TMEM88BA6NKF7 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC22.3■■□□□ 1.16
TMEM88BA6NKF7 URGCP-206ENST00000446958 365 ntTSL 2 BASIC22.3■■□□□ 1.16
TMEM88BA6NKF7 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC22.3■■□□□ 1.16
TMEM88BA6NKF7 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC22.3■■□□□ 1.16
TMEM88BA6NKF7 CAND2-206ENST00000626378 333 ntTSL 5 BASIC22.3■■□□□ 1.16
TMEM88BA6NKF7 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC22.3■■□□□ 1.16
TMEM88BA6NKF7 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TMEM88BA6NKF7 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC22.3■■□□□ 1.16
TMEM88BA6NKF7 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
TMEM88BA6NKF7 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TMEM88BA6NKF7 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC22.3■■□□□ 1.16
TMEM88BA6NKF7 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC22.3■■□□□ 1.16
TMEM88BA6NKF7 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TMEM88BA6NKF7 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
TMEM88BA6NKF7 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TMEM88BA6NKF7 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TMEM88BA6NKF7 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TMEM88BA6NKF7 HES2-202ENST00000377836 507 ntTSL 2 BASIC22.29■■□□□ 1.16
TMEM88BA6NKF7 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TMEM88BA6NKF7 PGAM5P1-201ENST00000518923 814 ntBASIC22.29■■□□□ 1.16
TMEM88BA6NKF7 AC139887.3-201ENST00000568585 713 ntBASIC22.29■■□□□ 1.16
TMEM88BA6NKF7 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC22.29■■□□□ 1.16
TMEM88BA6NKF7 AL390719.2-201ENST00000606993 987 ntBASIC22.29■■□□□ 1.16
TMEM88BA6NKF7 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC22.29■■□□□ 1.16
TMEM88BA6NKF7 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC22.29■■□□□ 1.16
TMEM88BA6NKF7 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
TMEM88BA6NKF7 NSUN5P1-202ENST00000421140 1535 ntBASIC22.29■■□□□ 1.16
TMEM88BA6NKF7 NSUN5P2-203ENST00000457352 1529 ntBASIC22.29■■□□□ 1.16
TMEM88BA6NKF7 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC22.29■■□□□ 1.16
TMEM88BA6NKF7 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
TMEM88BA6NKF7 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TMEM88BA6NKF7 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
TMEM88BA6NKF7 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
TMEM88BA6NKF7 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC22.28■■□□□ 1.16
TMEM88BA6NKF7 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
TMEM88BA6NKF7 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TMEM88BA6NKF7 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
TMEM88BA6NKF7 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC22.28■■□□□ 1.16
TMEM88BA6NKF7 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TMEM88BA6NKF7 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC22.28■■□□□ 1.16
TMEM88BA6NKF7 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC22.28■■□□□ 1.16
TMEM88BA6NKF7 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
TMEM88BA6NKF7 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TMEM88BA6NKF7 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC22.28■■□□□ 1.16
TMEM88BA6NKF7 LITAF-211ENST00000572255 516 ntTSL 4 BASIC22.28■■□□□ 1.16
TMEM88BA6NKF7 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC22.28■■□□□ 1.16
TMEM88BA6NKF7 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC22.28■■□□□ 1.16
TMEM88BA6NKF7 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC22.28■■□□□ 1.16
TMEM88BA6NKF7 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TMEM88BA6NKF7 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
TMEM88BA6NKF7 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
TMEM88BA6NKF7 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
TMEM88BA6NKF7 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC22.27■■□□□ 1.16
TMEM88BA6NKF7 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TMEM88BA6NKF7 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TMEM88BA6NKF7 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TMEM88BA6NKF7 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TMEM88BA6NKF7 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
TMEM88BA6NKF7 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
TMEM88BA6NKF7 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
TMEM88BA6NKF7 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC22.27■■□□□ 1.16
TMEM88BA6NKF7 AP003733.1-201ENST00000491725 852 ntBASIC22.27■■□□□ 1.16
TMEM88BA6NKF7 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC22.27■■□□□ 1.16
TMEM88BA6NKF7 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC22.27■■□□□ 1.16
TMEM88BA6NKF7 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC22.27■■□□□ 1.16
TMEM88BA6NKF7 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC22.27■■□□□ 1.16
TMEM88BA6NKF7 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC22.27■■□□□ 1.16
TMEM88BA6NKF7 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC22.27■■□□□ 1.16
TMEM88BA6NKF7 AC112497.1-201ENST00000624824 639 ntBASIC22.27■■□□□ 1.16
TMEM88BA6NKF7 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
TMEM88BA6NKF7 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC22.27■■□□□ 1.16
TMEM88BA6NKF7 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC22.27■■□□□ 1.16
TMEM88BA6NKF7 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC22.27■■□□□ 1.15
TMEM88BA6NKF7 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TMEM88BA6NKF7 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TMEM88BA6NKF7 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
TMEM88BA6NKF7 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC22.26■■□□□ 1.15
TMEM88BA6NKF7 RPS8P6-201ENST00000426177 609 ntBASIC22.26■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms