Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 CALM2P3-201ENST00000400429 449 ntBASIC5.18□□□□□ -1.58
SF3A1Q15459 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC5.18□□□□□ -1.58
SF3A1Q15459 MTATP6P18-201ENST00000417994 673 ntBASIC5.18□□□□□ -1.58
SF3A1Q15459 AC245028.1-201ENST00000423259 256 ntBASIC5.18□□□□□ -1.58
SF3A1Q15459 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC5.18□□□□□ -1.58
SF3A1Q15459 MTCO2P19-201ENST00000427513 598 ntBASIC5.18□□□□□ -1.58
SF3A1Q15459 USP9YP9-201ENST00000429406 715 ntBASIC5.18□□□□□ -1.58
SF3A1Q15459 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC5.18□□□□□ -1.58
SF3A1Q15459 AL672167.3-201ENST00000465951 960 ntBASIC5.18□□□□□ -1.58
SF3A1Q15459 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SF3A1Q15459 AC092451.1-201ENST00000480211 153 ntBASIC5.18□□□□□ -1.58
SF3A1Q15459 AL049874.1-201ENST00000489560 388 ntBASIC5.18□□□□□ -1.58
SF3A1Q15459 IGLV2-34-201ENST00000490007 283 ntBASIC5.18□□□□□ -1.58
SF3A1Q15459 RNU6-718P-201ENST00000516166 105 ntBASIC5.18□□□□□ -1.58
SF3A1Q15459 AC090151.1-201ENST00000520784 730 ntBASIC5.18□□□□□ -1.58
SF3A1Q15459 OR4R1P-201ENST00000529879 463 ntBASIC5.18□□□□□ -1.58
SF3A1Q15459 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SF3A1Q15459 RN7SL176P-201ENST00000580352 264 ntBASIC5.18□□□□□ -1.58
SF3A1Q15459 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC5.18□□□□□ -1.58
SF3A1Q15459 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC5.18□□□□□ -1.58
SF3A1Q15459 AC008536.2-201ENST00000607284 349 ntBASIC5.18□□□□□ -1.58
SF3A1Q15459 AC091979.2-201ENST00000607514 214 ntBASIC5.18□□□□□ -1.58
SF3A1Q15459 AC092954.2-201ENST00000609103 430 ntBASIC5.18□□□□□ -1.58
SF3A1Q15459 5S_rRNA.16-201ENST00000612928 119 ntBASIC5.18□□□□□ -1.58
SF3A1Q15459 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
SF3A1Q15459 AC139792.3-201ENST00000623525 224 ntBASIC5.18□□□□□ -1.58
SF3A1Q15459 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC5.18□□□□□ -1.58
SF3A1Q15459 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
SF3A1Q15459 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
SF3A1Q15459 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
SF3A1Q15459 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SF3A1Q15459 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SF3A1Q15459 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC5.18□□□□□ -1.58
SF3A1Q15459 NRK-204ENST00000540278 1687 ntTSL 2 BASIC5.18□□□□□ -1.58
SF3A1Q15459 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SF3A1Q15459 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SF3A1Q15459 AC012020.1-201ENST00000624541 1728 ntBASIC5.17□□□□□ -1.58
SF3A1Q15459 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SF3A1Q15459 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC5.17□□□□□ -1.58
SF3A1Q15459 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.17□□□□□ -1.58
SF3A1Q15459 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SF3A1Q15459 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC5.17□□□□□ -1.58
SF3A1Q15459 RNA5SP502-201ENST00000362694 119 ntBASIC5.17□□□□□ -1.58
SF3A1Q15459 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SF3A1Q15459 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SF3A1Q15459 RNA5SP87-201ENST00000384155 118 ntBASIC5.17□□□□□ -1.58
SF3A1Q15459 AL121834.1-202ENST00000404494 277 ntBASIC5.17□□□□□ -1.58
SF3A1Q15459 RNU2-9P-201ENST00000410194 145 ntBASIC5.17□□□□□ -1.58
SF3A1Q15459 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC5.17□□□□□ -1.58
SF3A1Q15459 CRYBB2P1-203ENST00000415709 538 ntBASIC5.17□□□□□ -1.58
SF3A1Q15459 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC5.17□□□□□ -1.58
SF3A1Q15459 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC5.17□□□□□ -1.58
SF3A1Q15459 RAC1P6-201ENST00000423911 575 ntBASIC5.17□□□□□ -1.58
SF3A1Q15459 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC5.17□□□□□ -1.58
SF3A1Q15459 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC5.17□□□□□ -1.58
SF3A1Q15459 OR2AS1P-201ENST00000427827 319 ntBASIC5.17□□□□□ -1.58
SF3A1Q15459 TIMM9P3-201ENST00000428659 274 ntBASIC5.17□□□□□ -1.58
SF3A1Q15459 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC5.17□□□□□ -1.58
SF3A1Q15459 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC5.17□□□□□ -1.58
SF3A1Q15459 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC5.17□□□□□ -1.58
SF3A1Q15459 AC022364.2-201ENST00000457963 554 ntBASIC5.17□□□□□ -1.58
SF3A1Q15459 RPL7AP28-201ENST00000464513 571 ntBASIC5.17□□□□□ -1.58
SF3A1Q15459 AC023598.1-201ENST00000472521 361 ntBASIC5.17□□□□□ -1.58
SF3A1Q15459 HSPE1P6-201ENST00000479457 291 ntBASIC5.17□□□□□ -1.58
SF3A1Q15459 STMN1P2-201ENST00000508435 439 ntBASIC5.17□□□□□ -1.58
SF3A1Q15459 AC009646.1-201ENST00000510455 318 ntBASIC5.17□□□□□ -1.58
SF3A1Q15459 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC5.17□□□□□ -1.58
SF3A1Q15459 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC5.17□□□□□ -1.58
SF3A1Q15459 AL606834.2-201ENST00000602954 668 ntBASIC5.17□□□□□ -1.58
SF3A1Q15459 AC010201.1-201ENST00000605051 540 ntBASIC5.17□□□□□ -1.58
SF3A1Q15459 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC5.17□□□□□ -1.58
SF3A1Q15459 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC5.17□□□□□ -1.58
SF3A1Q15459 AL731566.2-201ENST00000618971 317 ntBASIC5.17□□□□□ -1.58
SF3A1Q15459 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
SF3A1Q15459 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
SF3A1Q15459 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SF3A1Q15459 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
SF3A1Q15459 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
SF3A1Q15459 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
SF3A1Q15459 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
SF3A1Q15459 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC5.16□□□□□ -1.58
SF3A1Q15459 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
SF3A1Q15459 MIR558-201ENST00000384920 94 ntBASIC5.16□□□□□ -1.58
SF3A1Q15459 MIR1-2-201ENST00000384961 85 ntBASIC5.16□□□□□ -1.58
SF3A1Q15459 MIR659-201ENST00000384963 97 ntBASIC5.16□□□□□ -1.58
SF3A1Q15459 MED13P1-201ENST00000428342 171 ntBASIC5.16□□□□□ -1.58
SF3A1Q15459 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC5.16□□□□□ -1.58
SF3A1Q15459 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SF3A1Q15459 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC5.16□□□□□ -1.58
SF3A1Q15459 UBE2V1P8-201ENST00000437166 265 ntBASIC5.16□□□□□ -1.58
SF3A1Q15459 RPL23AP93-201ENST00000440847 484 ntBASIC5.16□□□□□ -1.58
SF3A1Q15459 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC5.16□□□□□ -1.58
SF3A1Q15459 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC5.16□□□□□ -1.58
SF3A1Q15459 AC013267.1-201ENST00000458227 267 ntBASIC5.16□□□□□ -1.58
SF3A1Q15459 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC5.16□□□□□ -1.58
SF3A1Q15459 RN7SL432P-201ENST00000484057 298 ntBASIC5.16□□□□□ -1.58
SF3A1Q15459 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC5.16□□□□□ -1.58
SF3A1Q15459 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC5.16□□□□□ -1.58
SF3A1Q15459 AC010342.1-201ENST00000514047 877 ntBASIC5.16□□□□□ -1.58
SF3A1Q15459 AC100770.1-201ENST00000532310 322 ntBASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms