Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC092192.1-201ENST00000633154 1018 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC2.85□□□□□ -1.95
COL4A4P53420 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.85□□□□□ -1.95
COL4A4P53420 AC109315.1-201ENST00000584143 1347 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 MIR16-2-201ENST00000362117 81 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 RNU5B-4P-201ENST00000363508 111 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 Y_RNA.508-201ENST00000384502 114 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC2.85□□□□□ -1.95
COL4A4P53420 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC2.85□□□□□ -1.95
COL4A4P53420 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
COL4A4P53420 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.85□□□□□ -1.95
COL4A4P53420 DPPA2P1-201ENST00000428060 556 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC2.85□□□□□ -1.95
COL4A4P53420 PTGES3P5-201ENST00000455109 434 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.85□□□□□ -1.95
COL4A4P53420 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
COL4A4P53420 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC2.85□□□□□ -1.95
COL4A4P53420 RPF2P2-201ENST00000504693 896 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 PCNAP1-201ENST00000505363 709 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 SNORA9.3-201ENST00000516383 129 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC2.85□□□□□ -1.95
COL4A4P53420 OR5AK3P-201ENST00000527486 1297 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 MTCO2P15-201ENST00000532655 656 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC2.85□□□□□ -1.95
COL4A4P53420 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC2.85□□□□□ -1.95
COL4A4P53420 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC2.85□□□□□ -1.95
COL4A4P53420 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC2.85□□□□□ -1.95
COL4A4P53420 AL353778.1-201ENST00000603149 408 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 AC073387.2-201ENST00000604797 784 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 WT1-AS_8.1-201ENST00000615200 275 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.85□□□□□ -1.95
COL4A4P53420 AP000676.3-201ENST00000623299 569 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 AP003072.4-201ENST00000624580 310 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.85□□□□□ -1.95
COL4A4P53420 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
COL4A4P53420 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC2.84□□□□□ -1.95
COL4A4P53420 AC104454.1-201ENST00000421341 1401 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 MTND5P29-201ENST00000458676 1807 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 AP002784.2-201ENST00000397300 549 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 RPS3AP26-201ENST00000398259 784 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 MIR1287-201ENST00000408492 90 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
COL4A4P53420 BTF3L4P1-201ENST00000413813 468 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 VTA1P1-201ENST00000414044 866 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 UBE2V1P10-201ENST00000414685 269 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 MTND4LP21-201ENST00000415303 295 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 RAD23BP2-201ENST00000416003 1207 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 YPEL5P1-201ENST00000419731 367 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 AC006366.1-201ENST00000422002 759 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC2.84□□□□□ -1.95
COL4A4P53420 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC2.84□□□□□ -1.95
COL4A4P53420 MTND2P21-201ENST00000436242 1042 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 HMGB3P12-201ENST00000438745 556 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.84□□□□□ -1.95
COL4A4P53420 HSFY3P-201ENST00000444242 1191 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 AL590399.6-201ENST00000446396 307 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC2.84□□□□□ -1.95
COL4A4P53420 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC2.84□□□□□ -1.95
COL4A4P53420 AC092155.2-201ENST00000454675 477 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 RPS27AP9-201ENST00000477681 438 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC2.84□□□□□ -1.95
COL4A4P53420 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.84□□□□□ -1.95
COL4A4P53420 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC2.84□□□□□ -1.95
COL4A4P53420 SUMO2P4-201ENST00000504193 276 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC2.84□□□□□ -1.95
COL4A4P53420 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
COL4A4P53420 AC060788.1-201ENST00000521318 469 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 FAM60DP-201ENST00000524174 632 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC2.84□□□□□ -1.95
COL4A4P53420 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC2.84□□□□□ -1.95
COL4A4P53420 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC2.84□□□□□ -1.95
COL4A4P53420 AP001596.2-201ENST00000608410 312 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 AC093673.2-201ENST00000609674 331 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC2.84□□□□□ -1.95
COL4A4P53420 AC092159.4-201ENST00000624944 550 ntBASIC2.84□□□□□ -1.95
COL4A4P53420 ADAM3A-203ENST00000461344 2157 ntBASIC2.84□□□□□ -1.96
COL4A4P53420 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
COL4A4P53420 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.96
COL4A4P53420 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
COL4A4P53420 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
COL4A4P53420 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.83□□□□□ -1.96
COL4A4P53420 RNU6-618P-201ENST00000363518 112 ntBASIC2.83□□□□□ -1.96
COL4A4P53420 Y_RNA.201-201ENST00000364052 96 ntBASIC2.83□□□□□ -1.96
COL4A4P53420 SNORD114-30-201ENST00000364448 72 ntBASIC2.83□□□□□ -1.96
COL4A4P53420 SNORD115-48-201ENST00000364764 76 ntBASIC2.83□□□□□ -1.96
COL4A4P53420 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.83□□□□□ -1.96
COL4A4P53420 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC2.83□□□□□ -1.96
COL4A4P53420 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
COL4A4P53420 AL158050.1-201ENST00000416077 457 ntBASIC2.83□□□□□ -1.96
COL4A4P53420 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC2.83□□□□□ -1.96
COL4A4P53420 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC2.83□□□□□ -1.96
COL4A4P53420 AL450263.2-201ENST00000439400 589 ntBASIC2.83□□□□□ -1.96
COL4A4P53420 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC2.83□□□□□ -1.96
COL4A4P53420 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC2.83□□□□□ -1.96
COL4A4P53420 C1DP3-201ENST00000455013 423 ntBASIC2.83□□□□□ -1.96
COL4A4P53420 AC118282.2-201ENST00000508739 374 ntBASIC2.83□□□□□ -1.96
COL4A4P53420 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC2.83□□□□□ -1.96
COL4A4P53420 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC2.83□□□□□ -1.96
COL4A4P53420 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC2.83□□□□□ -1.96
COL4A4P53420 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 94.3 ms