Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.94□□□□□ -1.62
COL6A1P12109 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.94□□□□□ -1.62
COL6A1P12109 AC139495.1-202ENST00000513164 354 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 AC016065.2-201ENST00000514530 444 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 AC104057.1-201ENST00000515547 497 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 RNA5SP249-201ENST00000516127 99 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 IGLVIV-53-201ENST00000520107 367 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 AC022616.6-201ENST00000520479 119 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.94□□□□□ -1.62
COL6A1P12109 LSM6P2-201ENST00000552208 177 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 AC010928.3-201ENST00000587712 541 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.94□□□□□ -1.62
COL6A1P12109 AC018638.8-201ENST00000588755 281 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 VN1R80P-201ENST00000597126 338 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 BBIP1P1-201ENST00000602999 279 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 AL161729.3-201ENST00000603533 673 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 AC079587.1-201ENST00000603846 277 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 AC055876.5-201ENST00000605667 259 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.94□□□□□ -1.62
COL6A1P12109 AC009237.17-201ENST00000618111 748 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 USP12-203ENST00000620323 349 ntTSL 3 BASIC4.94□□□□□ -1.62
COL6A1P12109 AL158801.5-201ENST00000623123 465 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 U6.101-201ENST00000637707 76 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL6A1P12109 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL6A1P12109 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL6A1P12109 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL6A1P12109 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL6A1P12109 Y_RNA.46-201ENST00000362695 102 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 RNU6-451P-201ENST00000362921 107 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 Y_RNA.159-201ENST00000363674 87 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 UBBP2-201ENST00000376781 231 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 RNU1-39P-201ENST00000383897 165 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 RNU6-1227P-201ENST00000383981 107 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 RNU6-441P-201ENST00000384545 106 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 MIR449B-201ENST00000384995 97 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 RNU6-373P-201ENST00000411247 98 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 MRPL50P2-201ENST00000416821 482 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 MTATP6P18-201ENST00000417994 673 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC4.93□□□□□ -1.62
COL6A1P12109 AC018644.1-201ENST00000429934 551 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC4.93□□□□□ -1.62
COL6A1P12109 AC140076.1-201ENST00000449897 361 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 AC133473.1-201ENST00000455173 299 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 RPL7P15-201ENST00000461190 712 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 RPL31P50-201ENST00000471002 296 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 AC083798.1-201ENST00000472671 131 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.93□□□□□ -1.62
COL6A1P12109 AC034222.1-201ENST00000494052 532 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 RNU6-714P-201ENST00000516963 103 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC4.93□□□□□ -1.62
COL6A1P12109 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC4.93□□□□□ -1.62
COL6A1P12109 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.93□□□□□ -1.62
COL6A1P12109 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.93□□□□□ -1.62
COL6A1P12109 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.93□□□□□ -1.62
COL6A1P12109 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.93□□□□□ -1.62
COL6A1P12109 PHBP17-201ENST00000528576 541 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 AP000889.1-201ENST00000530968 660 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.93□□□□□ -1.62
COL6A1P12109 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC4.93□□□□□ -1.62
COL6A1P12109 AC037471.2-201ENST00000564941 598 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL6A1P12109 AC008966.2-201ENST00000606157 453 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.93□□□□□ -1.62
COL6A1P12109 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.93□□□□□ -1.62
COL6A1P12109 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.93□□□□□ -1.62
COL6A1P12109 AC012442.3-202ENST00000636742 206 ntBASIC4.93□□□□□ -1.62
COL6A1P12109 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL6A1P12109 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL6A1P12109 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
COL6A1P12109 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
COL6A1P12109 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL6A1P12109 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.92□□□□□ -1.62
COL6A1P12109 AL161912.2-201ENST00000565707 3007 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.92□□□□□ -1.62
COL6A1P12109 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC4.92□□□□□ -1.62
COL6A1P12109 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
COL6A1P12109 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
COL6A1P12109 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A1P12109 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
COL6A1P12109 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A1P12109 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A1P12109 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
COL6A1P12109 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A1P12109 SNORA63.1-201ENST00000362493 131 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 RNU6-525P-201ENST00000363685 104 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 Y_RNA.166-201ENST00000363730 102 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 RNVU1-3-201ENST00000364313 161 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 RNA5SP130-201ENST00000364431 114 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A1P12109 RNU6-456P-201ENST00000384493 107 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 RNU6ATAC-201ENST00000408749 126 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 OR9R1P-201ENST00000412200 877 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 AL133384.1-201ENST00000412744 351 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC4.92□□□□□ -1.62
COL6A1P12109 RPL31P2-201ENST00000413849 377 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 CKS1BP6-201ENST00000424932 240 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 AL353777.1-201ENST00000425552 326 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 AC005534.2-201ENST00000431047 433 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 NDUFA5P4-201ENST00000436704 385 ntBASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms