Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
LDB3O75112 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.66□□□□□ -1.82
LDB3O75112 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.66□□□□□ -1.82
LDB3O75112 AL133412.1-201ENST00000380194 2992 ntBASIC3.66□□□□□ -1.82
LDB3O75112 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
LDB3O75112 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
LDB3O75112 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
LDB3O75112 RNU6-289P-201ENST00000364093 107 ntBASIC3.65□□□□□ -1.83
LDB3O75112 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.65□□□□□ -1.83
LDB3O75112 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.65□□□□□ -1.83
LDB3O75112 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
LDB3O75112 RNU6-213P-201ENST00000384051 104 ntBASIC3.65□□□□□ -1.83
LDB3O75112 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
LDB3O75112 CCNG1P1-201ENST00000406783 885 ntBASIC3.65□□□□□ -1.83
LDB3O75112 RPS3AP24-201ENST00000407896 734 ntBASIC3.65□□□□□ -1.83
LDB3O75112 MIR1305-201ENST00000408300 86 ntBASIC3.65□□□□□ -1.83
LDB3O75112 RN7SKP177-201ENST00000410567 355 ntBASIC3.65□□□□□ -1.83
LDB3O75112 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.65□□□□□ -1.83
LDB3O75112 MTCYBP24-201ENST00000420387 1106 ntBASIC3.65□□□□□ -1.83
LDB3O75112 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.65□□□□□ -1.83
LDB3O75112 AL035410.1-201ENST00000427409 427 ntBASIC3.65□□□□□ -1.83
LDB3O75112 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
LDB3O75112 RPL37P21-201ENST00000435890 276 ntBASIC3.65□□□□□ -1.83
LDB3O75112 USP9YP7-201ENST00000436723 430 ntBASIC3.65□□□□□ -1.83
LDB3O75112 LSM1P1-201ENST00000438629 273 ntBASIC3.65□□□□□ -1.83
LDB3O75112 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.65□□□□□ -1.83
LDB3O75112 USP9YP32-201ENST00000452432 430 ntBASIC3.65□□□□□ -1.83
LDB3O75112 AC022034.3-201ENST00000471393 478 ntBASIC3.65□□□□□ -1.83
LDB3O75112 HMGB1P36-201ENST00000487709 576 ntBASIC3.65□□□□□ -1.83
LDB3O75112 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
LDB3O75112 AC022447.3-201ENST00000506865 495 ntBASIC3.65□□□□□ -1.83
LDB3O75112 NDUFB4P2-201ENST00000509515 391 ntBASIC3.65□□□□□ -1.83
LDB3O75112 AC114781.4-201ENST00000513707 639 ntBASIC3.65□□□□□ -1.83
LDB3O75112 Vault.1-201ENST00000516474 102 ntBASIC3.65□□□□□ -1.83
LDB3O75112 PAICSP4-201ENST00000517543 1253 ntBASIC3.65□□□□□ -1.83
LDB3O75112 IGKV2D-36-201ENST00000518643 226 ntBASIC3.65□□□□□ -1.83
LDB3O75112 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.65□□□□□ -1.83
LDB3O75112 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC3.65□□□□□ -1.83
LDB3O75112 COX6CP8-201ENST00000522620 226 ntBASIC3.65□□□□□ -1.83
LDB3O75112 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
LDB3O75112 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.65□□□□□ -1.83
LDB3O75112 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC3.65□□□□□ -1.83
LDB3O75112 ZNF519P2-201ENST00000557032 169 ntBASIC3.65□□□□□ -1.83
LDB3O75112 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.65□□□□□ -1.83
LDB3O75112 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.65□□□□□ -1.83
LDB3O75112 AP000907.4-201ENST00000604143 237 ntBASIC3.65□□□□□ -1.83
LDB3O75112 PRELID3BP8-201ENST00000604148 295 ntBASIC3.65□□□□□ -1.83
LDB3O75112 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.65□□□□□ -1.83
LDB3O75112 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
LDB3O75112 U73479.1-201ENST00000618062 168 ntBASIC3.65□□□□□ -1.83
LDB3O75112 AC104985.2-201ENST00000620598 500 ntBASIC3.65□□□□□ -1.83
LDB3O75112 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.65□□□□□ -1.83
LDB3O75112 AC099654.14-201ENST00000638599 341 ntBASIC3.65□□□□□ -1.83
LDB3O75112 AC090337.1-201ENST00000579651 2074 ntBASIC3.65□□□□□ -1.83
LDB3O75112 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.83
LDB3O75112 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.83
LDB3O75112 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.65□□□□□ -1.83
LDB3O75112 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
LDB3O75112 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
LDB3O75112 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.64□□□□□ -1.83
LDB3O75112 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
LDB3O75112 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
LDB3O75112 AC097714.1-201ENST00000511272 1647 ntBASIC3.64□□□□□ -1.83
LDB3O75112 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
LDB3O75112 RN7SKP44-201ENST00000363602 316 ntBASIC3.64□□□□□ -1.83
LDB3O75112 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.64□□□□□ -1.83
LDB3O75112 RNU5A-6P-201ENST00000384136 116 ntBASIC3.64□□□□□ -1.83
LDB3O75112 RNU6-878P-201ENST00000384578 110 ntBASIC3.64□□□□□ -1.83
LDB3O75112 U8.14-201ENST00000390843 143 ntBASIC3.64□□□□□ -1.83
LDB3O75112 RPL31P1-201ENST00000398116 372 ntBASIC3.64□□□□□ -1.83
LDB3O75112 CALM2P3-201ENST00000400429 449 ntBASIC3.64□□□□□ -1.83
LDB3O75112 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.64□□□□□ -1.83
LDB3O75112 USP9YP13-201ENST00000417797 480 ntBASIC3.64□□□□□ -1.83
LDB3O75112 RPS12P5-201ENST00000423449 371 ntBASIC3.64□□□□□ -1.83
LDB3O75112 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.64□□□□□ -1.83
LDB3O75112 RPL7P2-201ENST00000427639 268 ntBASIC3.64□□□□□ -1.83
LDB3O75112 RPL21P133-201ENST00000443666 476 ntBASIC3.64□□□□□ -1.83
LDB3O75112 PDSS1P2-201ENST00000449397 678 ntBASIC3.64□□□□□ -1.83
LDB3O75112 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.64□□□□□ -1.83
LDB3O75112 FGF7P3-201ENST00000454645 303 ntBASIC3.64□□□□□ -1.83
LDB3O75112 BX322784.1-201ENST00000455793 1077 ntBASIC3.64□□□□□ -1.83
LDB3O75112 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.64□□□□□ -1.83
LDB3O75112 LARP1BP2-201ENST00000486594 519 ntBASIC3.64□□□□□ -1.83
LDB3O75112 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.64□□□□□ -1.83
LDB3O75112 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.64□□□□□ -1.83
LDB3O75112 RNU6-352P-201ENST00000516908 107 ntBASIC3.64□□□□□ -1.83
LDB3O75112 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.64□□□□□ -1.83
LDB3O75112 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
LDB3O75112 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.64□□□□□ -1.83
LDB3O75112 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.64□□□□□ -1.83
LDB3O75112 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
LDB3O75112 AK6P1-201ENST00000540219 478 ntBASIC3.64□□□□□ -1.83
LDB3O75112 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.64□□□□□ -1.83
LDB3O75112 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC3.64□□□□□ -1.83
LDB3O75112 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.64□□□□□ -1.83
LDB3O75112 BNIP3P33-201ENST00000598912 569 ntBASIC3.64□□□□□ -1.83
LDB3O75112 BBIP1P1-201ENST00000602999 279 ntBASIC3.64□□□□□ -1.83
LDB3O75112 AP000860.1-201ENST00000605250 559 ntBASIC3.64□□□□□ -1.83
LDB3O75112 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.64□□□□□ -1.83
LDB3O75112 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms