Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RNA5SP50-201ENST00000363731 107 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS39Q96JC1 SNORD116-12-201ENST00000384468 92 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 MIR135A2-201ENST00000384854 100 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 MIR449B-201ENST00000384995 97 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 SNORD65.1-201ENST00000390889 71 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 ATP5F1P3-201ENST00000397213 657 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 AC007899.1-201ENST00000412776 775 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 HSFY4P-201ENST00000415994 1181 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VPS39Q96JC1 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VPS39Q96JC1 AC019178.2-201ENST00000423595 505 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.23□□□□□ -1.89
VPS39Q96JC1 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS39Q96JC1 SEPT7P5-201ENST00000434048 306 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 AC091862.1-201ENST00000438016 1100 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 AC004854.1-201ENST00000440356 349 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 OR10R1P-201ENST00000441524 1141 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
VPS39Q96JC1 AL592447.1-201ENST00000447592 540 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 SNRPGP6-201ENST00000451124 220 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 NAA50-206ENST00000493454 964 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS39Q96JC1 SNORA31.26-201ENST00000517250 137 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VPS39Q96JC1 AC024224.1-201ENST00000538284 609 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.23□□□□□ -1.89
VPS39Q96JC1 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS39Q96JC1 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS39Q96JC1 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS39Q96JC1 AC079089.3-201ENST00000603094 673 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 AL160237.3-201ENST00000604114 1013 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 AL162713.1-201ENST00000604480 262 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 AC073657.2-201ENST00000605661 303 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 TUG1_1.1-201ENST00000610654 145 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 PART1_2.1-201ENST00000612397 250 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 AC090617.7-201ENST00000623952 126 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 AP003485.1-201ENST00000625093 753 ntBASIC3.23□□□□□ -1.89
VPS39Q96JC1 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC3.23□□□□□ -1.89
VPS39Q96JC1 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
VPS39Q96JC1 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VPS39Q96JC1 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS39Q96JC1 Z99496.1-201ENST00000469424 1477 ntBASIC3.22□□□□□ -1.89
VPS39Q96JC1 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS39Q96JC1 ZNF29P-201ENST00000225587 168 ntBASIC3.22□□□□□ -1.89
VPS39Q96JC1 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS39Q96JC1 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS39Q96JC1 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS39Q96JC1 RNU6-1197P-201ENST00000391183 107 ntBASIC3.22□□□□□ -1.89
VPS39Q96JC1 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VPS39Q96JC1 RNU2-43P-201ENST00000410306 190 ntBASIC3.22□□□□□ -1.89
VPS39Q96JC1 BX323014.1-201ENST00000412876 237 ntBASIC3.22□□□□□ -1.89
VPS39Q96JC1 LUZP4P1-201ENST00000415420 344 ntBASIC3.22□□□□□ -1.89
VPS39Q96JC1 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS39Q96JC1 AC234781.2-201ENST00000426370 994 ntBASIC3.22□□□□□ -1.89
VPS39Q96JC1 NANOGP2-201ENST00000435391 727 ntBASIC3.22□□□□□ -1.89
VPS39Q96JC1 FTH1P1-201ENST00000437933 532 ntBASIC3.22□□□□□ -1.89
VPS39Q96JC1 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS39Q96JC1 MTCYBP11-201ENST00000447254 1109 ntBASIC3.22□□□□□ -1.89
VPS39Q96JC1 RPS26P21-201ENST00000475397 348 ntBASIC3.22□□□□□ -1.89
VPS39Q96JC1 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS39Q96JC1 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS39Q96JC1 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS39Q96JC1 RNU6-1261P-201ENST00000517194 104 ntBASIC3.22□□□□□ -1.89
VPS39Q96JC1 AP000867.2-201ENST00000532468 320 ntBASIC3.22□□□□□ -1.89
VPS39Q96JC1 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS39Q96JC1 HIGD1AP1-201ENST00000550979 275 ntBASIC3.22□□□□□ -1.89
VPS39Q96JC1 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS39Q96JC1 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS39Q96JC1 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS39Q96JC1 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.22□□□□□ -1.89
VPS39Q96JC1 AP000254.1-201ENST00000609934 520 ntBASIC3.22□□□□□ -1.89
VPS39Q96JC1 AL355365.1-201ENST00000616480 294 ntBASIC3.22□□□□□ -1.89
VPS39Q96JC1 AC004009.2-201ENST00000623016 728 ntBASIC3.22□□□□□ -1.89
VPS39Q96JC1 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS39Q96JC1 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS39Q96JC1 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS39Q96JC1 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS39Q96JC1 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.22□□□□□ -1.89
VPS39Q96JC1 AP005901.5-201ENST00000545779 1796 ntBASIC3.22□□□□□ -1.89
VPS39Q96JC1 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS39Q96JC1 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS39Q96JC1 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VPS39Q96JC1 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS39Q96JC1 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
VPS39Q96JC1 MTND5P24-201ENST00000438892 1767 ntBASIC3.21□□□□□ -1.9
VPS39Q96JC1 MIR148B-201ENST00000362252 99 ntBASIC3.21□□□□□ -1.9
VPS39Q96JC1 Y_RNA.25-201ENST00000362528 102 ntBASIC3.21□□□□□ -1.9
VPS39Q96JC1 snoZ40.1-201ENST00000364540 72 ntBASIC3.21□□□□□ -1.9
VPS39Q96JC1 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
VPS39Q96JC1 MIR1290-201ENST00000408735 78 ntBASIC3.21□□□□□ -1.9
VPS39Q96JC1 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.21□□□□□ -1.9
VPS39Q96JC1 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS39Q96JC1 AC069157.1-201ENST00000421749 137 ntBASIC3.21□□□□□ -1.9
VPS39Q96JC1 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.21□□□□□ -1.9
VPS39Q96JC1 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC3.21□□□□□ -1.9
VPS39Q96JC1 MTND2P5-201ENST00000432656 1006 ntBASIC3.21□□□□□ -1.9
VPS39Q96JC1 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.21□□□□□ -1.9
VPS39Q96JC1 RPL31P60-201ENST00000478450 367 ntBASIC3.21□□□□□ -1.9
VPS39Q96JC1 AC079203.1-201ENST00000487972 404 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 130.6 ms