Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AP000790.1-201ENST00000528891 737 ntBASIC4.52□□□□□ -1.69
CHFRQ96EP1 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC4.52□□□□□ -1.69
CHFRQ96EP1 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.52□□□□□ -1.69
CHFRQ96EP1 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.52□□□□□ -1.69
CHFRQ96EP1 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC4.52□□□□□ -1.69
CHFRQ96EP1 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC4.52□□□□□ -1.69
CHFRQ96EP1 AC093227.2-201ENST00000589357 285 ntBASIC4.52□□□□□ -1.69
CHFRQ96EP1 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.52□□□□□ -1.69
CHFRQ96EP1 AC004853.1-201ENST00000604902 698 ntBASIC4.52□□□□□ -1.69
CHFRQ96EP1 AC011816.2-201ENST00000607089 556 ntBASIC4.52□□□□□ -1.69
CHFRQ96EP1 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.52□□□□□ -1.69
CHFRQ96EP1 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.52□□□□□ -1.69
CHFRQ96EP1 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.52□□□□□ -1.69
CHFRQ96EP1 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
CHFRQ96EP1 AC010300.1-201ENST00000600671 5134 ntBASIC4.52□□□□□ -1.69
CHFRQ96EP1 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.52□□□□□ -1.69
CHFRQ96EP1 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CHFRQ96EP1 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
CHFRQ96EP1 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CHFRQ96EP1 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CHFRQ96EP1 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CHFRQ96EP1 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
CHFRQ96EP1 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
CHFRQ96EP1 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.51□□□□□ -1.69
CHFRQ96EP1 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
CHFRQ96EP1 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
CHFRQ96EP1 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC4.51□□□□□ -1.69
CHFRQ96EP1 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
CHFRQ96EP1 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.51□□□□□ -1.69
CHFRQ96EP1 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CHFRQ96EP1 SPRR2C-201ENST00000290702 219 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC4.51□□□□□ -1.69
CHFRQ96EP1 RNA5SP502-201ENST00000362694 119 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 Y_RNA.184-201ENST00000363884 108 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 Y_RNA.315-201ENST00000365117 102 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 Y_RNA.381-201ENST00000365666 102 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 Y_RNA.481-201ENST00000384373 102 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 RNU6-505P-201ENST00000384427 107 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 MIR16-1-201ENST00000385271 89 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 SNORA48.7-201ENST00000391302 135 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 PPIAP31-201ENST00000405422 495 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 AL603908.1-201ENST00000406098 201 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 RPL23AP48-201ENST00000406913 488 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 Y_RNA.608-201ENST00000410647 95 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 AC245054.2-201ENST00000415639 319 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 RPL35AP12-201ENST00000425362 338 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 COX6CP15-201ENST00000426313 211 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC4.51□□□□□ -1.69
CHFRQ96EP1 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC4.51□□□□□ -1.69
CHFRQ96EP1 HMGB3P12-201ENST00000438745 556 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 RPL7P12-201ENST00000446719 750 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
CHFRQ96EP1 RPL37P3-201ENST00000456825 293 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 MTND5P22-201ENST00000458380 195 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 RNU6-1208P-201ENST00000459588 107 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 Y_RNA.631-201ENST00000459607 101 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.51□□□□□ -1.69
CHFRQ96EP1 AC090096.1-201ENST00000489168 390 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 RPL30P11-201ENST00000495304 339 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
CHFRQ96EP1 SLC25A15P5-201ENST00000508033 253 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 HMGB1P23-201ENST00000518743 568 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 OR5B19P-201ENST00000531766 928 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.51□□□□□ -1.69
CHFRQ96EP1 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.51□□□□□ -1.69
CHFRQ96EP1 AL845331.3-202ENST00000562856 261 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC4.51□□□□□ -1.69
CHFRQ96EP1 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC4.51□□□□□ -1.69
CHFRQ96EP1 AC141257.3-201ENST00000572906 215 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 AC067852.4-201ENST00000590314 478 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 uc_338.5-201ENST00000611839 155 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 AC140479.6-201ENST00000633535 357 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.51□□□□□ -1.69
CHFRQ96EP1 AC100810.6-201ENST00000638068 285 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.51□□□□□ -1.69
CHFRQ96EP1 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
CHFRQ96EP1 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
CHFRQ96EP1 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC4.51□□□□□ -1.69
CHFRQ96EP1 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CHFRQ96EP1 AC018529.3-201ENST00000624212 2254 ntBASIC4.51□□□□□ -1.69
CHFRQ96EP1 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
CHFRQ96EP1 AC139769.1-204ENST00000472297 1931 ntBASIC4.5□□□□□ -1.69
CHFRQ96EP1 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
CHFRQ96EP1 OR5BR1P-201ENST00000524992 1330 ntBASIC4.5□□□□□ -1.69
CHFRQ96EP1 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CHFRQ96EP1 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.5□□□□□ -1.69
CHFRQ96EP1 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CHFRQ96EP1 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
CHFRQ96EP1 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
CHFRQ96EP1 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC4.5□□□□□ -1.69
CHFRQ96EP1 OR4A15-201ENST00000314706 1035 ntBASIC4.5□□□□□ -1.69
CHFRQ96EP1 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
CHFRQ96EP1 RNU6-282P-201ENST00000365357 103 ntBASIC4.5□□□□□ -1.69
CHFRQ96EP1 RNA5SP151-201ENST00000365632 117 ntBASIC4.5□□□□□ -1.69
CHFRQ96EP1 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
CHFRQ96EP1 RNU6-809P-201ENST00000384461 107 ntBASIC4.5□□□□□ -1.69
CHFRQ96EP1 RN7SKP177-201ENST00000410567 355 ntBASIC4.5□□□□□ -1.69
CHFRQ96EP1 RNU2-47P-201ENST00000410649 186 ntBASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms