Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXC9P31274 USP9YP35-201ENST00000435696 412 ntBASIC4.04□□□□□ -1.76
HOXC9P31274 MTCYBP11-201ENST00000447254 1109 ntBASIC4.04□□□□□ -1.76
HOXC9P31274 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXC9P31274 RPL37P4-201ENST00000448908 268 ntBASIC4.04□□□□□ -1.76
HOXC9P31274 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXC9P31274 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXC9P31274 KLRA1P-201ENST00000503499 986 ntBASIC4.04□□□□□ -1.76
HOXC9P31274 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXC9P31274 AC118465.1-201ENST00000513820 1271 ntBASIC4.04□□□□□ -1.76
HOXC9P31274 AC104057.1-201ENST00000515547 497 ntBASIC4.04□□□□□ -1.76
HOXC9P31274 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXC9P31274 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXC9P31274 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXC9P31274 AC069304.2-201ENST00000605154 435 ntBASIC4.04□□□□□ -1.76
HOXC9P31274 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXC9P31274 AC007390.2-201ENST00000606229 3803 ntBASIC4.04□□□□□ -1.76
HOXC9P31274 VIS1.1-201ENST00000610517 203 ntBASIC4.04□□□□□ -1.76
HOXC9P31274 AL136981.2-201ENST00000617319 734 ntBASIC4.04□□□□□ -1.76
HOXC9P31274 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HOXC9P31274 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXC9P31274 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXC9P31274 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXC9P31274 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HOXC9P31274 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXC9P31274 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXC9P31274 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXC9P31274 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
HOXC9P31274 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXC9P31274 RNU6-931P-201ENST00000363850 107 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 CUBN-201ENST00000377823 705 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXC9P31274 RNU6-253P-201ENST00000384730 105 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 MIR708-201ENST00000390708 88 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 ARF4P3-201ENST00000397387 509 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 RPL7P8-201ENST00000411964 730 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 AL133384.1-201ENST00000412744 351 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXC9P31274 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXC9P31274 AC093156.1-201ENST00000440382 670 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 MTND2P20-201ENST00000440805 661 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 RPS12P18-201ENST00000442381 270 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 MTND2P22-201ENST00000444325 1033 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXC9P31274 RPL39P6-201ENST00000448289 150 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 AC104073.1-201ENST00000451988 151 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXC9P31274 TRBV26-201ENST00000456572 344 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXC9P31274 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXC9P31274 BET1P1-201ENST00000482276 359 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXC9P31274 AC104685.1-201ENST00000502445 371 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 HSPE1P23-201ENST00000509838 286 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 XKRY-201ENST00000510392 1100 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 AC026412.2-201ENST00000512270 1075 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 RNU6-583P-201ENST00000516012 92 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXC9P31274 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC4.03□□□□□ -1.76
HOXC9P31274 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXC9P31274 MIR4425-201ENST00000580572 84 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 MIR4999-201ENST00000585029 91 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 BNIP3P24-201ENST00000593398 557 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 AL109653.1-201ENST00000603091 248 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 AC010680.4-201ENST00000605334 543 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 AC008083.4-201ENST00000615076 444 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
HOXC9P31274 AC004943.3-201ENST00000624116 600 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC4.03□□□□□ -1.76
HOXC9P31274 AC073476.4-201ENST00000628409 72 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 MTND5P24-201ENST00000438892 1767 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXC9P31274 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXC9P31274 AL390862.1-201ENST00000635467 1469 ntBASIC4.03□□□□□ -1.76
HOXC9P31274 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.03□□□□□ -1.77
HOXC9P31274 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXC9P31274 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
HOXC9P31274 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXC9P31274 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXC9P31274 U3.15-201ENST00000365398 212 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXC9P31274 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXC9P31274 AC016769.3-201ENST00000396562 315 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 EIF5P1-201ENST00000400019 1231 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXC9P31274 RNU4-72P-201ENST00000410754 173 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXC9P31274 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXC9P31274 RPS12P23-201ENST00000419579 400 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 AL035410.1-201ENST00000427409 427 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 PSMA2P3-201ENST00000429685 675 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 AC022018.1-201ENST00000430685 241 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXC9P31274 RPL23AP35-201ENST00000451906 501 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 AL645939.1-201ENST00000453429 797 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXC9P31274 RPL21P8-201ENST00000465083 535 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 PRELID3BP7-201ENST00000503606 469 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXC9P31274 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXC9P31274 HIGD1AP13-201ENST00000509878 289 ntBASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 113.8 ms