Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 TPTEP1-208ENST00000636884 213 ntBASIC4.79□□□□□ -1.64
USP53Q70EK8 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
USP53Q70EK8 AC104623.2-202ENST00000623477 4002 ntBASIC4.79□□□□□ -1.64
USP53Q70EK8 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
USP53Q70EK8 ADAM5-202ENST00000399789 1942 ntBASIC4.79□□□□□ -1.64
USP53Q70EK8 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
USP53Q70EK8 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
USP53Q70EK8 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
USP53Q70EK8 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
USP53Q70EK8 TAB3P1-202ENST00000452645 1634 ntBASIC4.79□□□□□ -1.64
USP53Q70EK8 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.79□□□□□ -1.64
USP53Q70EK8 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.79□□□□□ -1.64
USP53Q70EK8 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
USP53Q70EK8 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.78□□□□□ -1.64
USP53Q70EK8 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.78□□□□□ -1.64
USP53Q70EK8 AC116667.1-201ENST00000604855 2072 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
USP53Q70EK8 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.78□□□□□ -1.64
USP53Q70EK8 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
USP53Q70EK8 AC126755.2-208ENST00000327792 462 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 AC138969.1-213ENST00000331436 462 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
USP53Q70EK8 RNU6-179P-201ENST00000363350 107 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 RNU6-960P-201ENST00000364056 120 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 U3.32-201ENST00000408116 212 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 RNU4-65P-201ENST00000410473 140 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 BEND7P1-201ENST00000422058 457 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.78□□□□□ -1.64
USP53Q70EK8 RPL18P10-201ENST00000425606 538 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 RPL7AP61-201ENST00000443410 636 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.78□□□□□ -1.64
USP53Q70EK8 AC234775.1-201ENST00000454247 670 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 RPL23AP56-201ENST00000460778 453 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 AC007547.1-201ENST00000462177 490 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 RPS15AP36-201ENST00000492022 382 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 AC026979.1-201ENST00000492525 396 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 HMGN1P13-201ENST00000505795 138 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.78□□□□□ -1.64
USP53Q70EK8 RNU6-1092P-201ENST00000516955 87 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC4.78□□□□□ -1.64
USP53Q70EK8 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.78□□□□□ -1.64
USP53Q70EK8 AC009643.1-201ENST00000532030 391 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 OR5B10P-201ENST00000532869 642 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.78□□□□□ -1.64
USP53Q70EK8 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.78□□□□□ -1.64
USP53Q70EK8 AC024619.4-201ENST00000580924 316 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 MIR4424-201ENST00000585257 86 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.78□□□□□ -1.64
USP53Q70EK8 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.78□□□□□ -1.64
USP53Q70EK8 AC007497.1-201ENST00000610421 561 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
USP53Q70EK8 MIR6130-201ENST00000619419 109 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 AC090574.1-201ENST00000623186 233 ntBASIC4.78□□□□□ -1.64
USP53Q70EK8 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.78□□□□□ -1.64
USP53Q70EK8 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
USP53Q70EK8 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.78□□□□□ -1.64
USP53Q70EK8 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
USP53Q70EK8 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
USP53Q70EK8 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
USP53Q70EK8 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
USP53Q70EK8 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
USP53Q70EK8 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.77□□□□□ -1.65
USP53Q70EK8 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
USP53Q70EK8 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
USP53Q70EK8 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.77□□□□□ -1.65
USP53Q70EK8 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
USP53Q70EK8 Y_RNA.100-201ENST00000363141 102 ntBASIC4.77□□□□□ -1.65
USP53Q70EK8 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
USP53Q70EK8 RNU6-38P-201ENST00000384085 107 ntBASIC4.77□□□□□ -1.65
USP53Q70EK8 MIR153-1-201ENST00000384914 90 ntBASIC4.77□□□□□ -1.65
USP53Q70EK8 snosnR66.1-201ENST00000391095 99 ntBASIC4.77□□□□□ -1.65
USP53Q70EK8 AL356057.2-201ENST00000403318 432 ntBASIC4.77□□□□□ -1.65
USP53Q70EK8 FAT1P1-201ENST00000406588 507 ntBASIC4.77□□□□□ -1.65
USP53Q70EK8 Y_RNA.615-201ENST00000410769 117 ntBASIC4.77□□□□□ -1.65
USP53Q70EK8 NCOR1P3-201ENST00000420479 303 ntBASIC4.77□□□□□ -1.65
USP53Q70EK8 AC018630.2-202ENST00000422992 927 ntBASIC4.77□□□□□ -1.65
USP53Q70EK8 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.77□□□□□ -1.65
USP53Q70EK8 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
USP53Q70EK8 AC093414.1-201ENST00000434712 514 ntBASIC4.77□□□□□ -1.65
USP53Q70EK8 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC4.77□□□□□ -1.65
USP53Q70EK8 AC007677.1-201ENST00000445757 515 ntBASIC4.77□□□□□ -1.65
USP53Q70EK8 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC4.77□□□□□ -1.65
USP53Q70EK8 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.77□□□□□ -1.65
USP53Q70EK8 AL118520.1-201ENST00000450770 291 ntBASIC4.77□□□□□ -1.65
USP53Q70EK8 AL356981.1-201ENST00000454879 684 ntBASIC4.77□□□□□ -1.65
USP53Q70EK8 RNU6-333P-201ENST00000459117 107 ntBASIC4.77□□□□□ -1.65
USP53Q70EK8 AC103987.1-201ENST00000473394 348 ntBASIC4.77□□□□□ -1.65
USP53Q70EK8 RPL21P99-201ENST00000480369 423 ntBASIC4.77□□□□□ -1.65
USP53Q70EK8 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC4.77□□□□□ -1.65
USP53Q70EK8 SNORA19.2-201ENST00000516013 114 ntBASIC4.77□□□□□ -1.65
USP53Q70EK8 RN7SKP276-201ENST00000516242 268 ntBASIC4.77□□□□□ -1.65
USP53Q70EK8 RNU6-277P-201ENST00000516272 106 ntBASIC4.77□□□□□ -1.65
USP53Q70EK8 RN7SKP92-201ENST00000517266 244 ntBASIC4.77□□□□□ -1.65
USP53Q70EK8 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC4.77□□□□□ -1.65
USP53Q70EK8 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC4.77□□□□□ -1.65
USP53Q70EK8 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.77□□□□□ -1.65
USP53Q70EK8 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC4.77□□□□□ -1.65
USP53Q70EK8 NCAPGP2-201ENST00000557911 754 ntBASIC4.77□□□□□ -1.65
USP53Q70EK8 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 148.4 ms