Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL9A1P20849 MIR410-201ENST00000362222 80 ntBASIC6.26□□□□□ -1.41
COL9A1P20849 RNU6-827P-201ENST00000365553 106 ntBASIC6.26□□□□□ -1.41
COL9A1P20849 RN7SKP114-201ENST00000410327 279 ntBASIC6.26□□□□□ -1.41
COL9A1P20849 RNU2-52P-201ENST00000410680 190 ntBASIC6.26□□□□□ -1.41
COL9A1P20849 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC6.26□□□□□ -1.41
COL9A1P20849 SNORD56-201ENST00000413522 71 ntBASIC6.26□□□□□ -1.41
COL9A1P20849 OOSP1P1-201ENST00000423265 274 ntBASIC6.26□□□□□ -1.41
COL9A1P20849 FHP1-201ENST00000442741 703 ntBASIC6.26□□□□□ -1.41
COL9A1P20849 EEF1A1P1-201ENST00000447052 739 ntBASIC6.26□□□□□ -1.41
COL9A1P20849 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC6.26□□□□□ -1.41
COL9A1P20849 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL9A1P20849 SNORA70.11-201ENST00000515987 138 ntBASIC6.26□□□□□ -1.41
COL9A1P20849 SNORA70.13-201ENST00000516116 138 ntBASIC6.26□□□□□ -1.41
COL9A1P20849 SNORD116-25-201ENST00000516517 92 ntBASIC6.26□□□□□ -1.41
COL9A1P20849 RNU6-612P-201ENST00000516909 102 ntBASIC6.26□□□□□ -1.41
COL9A1P20849 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC6.26□□□□□ -1.41
COL9A1P20849 AL049872.1-201ENST00000556323 322 ntBASIC6.26□□□□□ -1.41
COL9A1P20849 AC112693.2-201ENST00000556538 232 ntBASIC6.26□□□□□ -1.41
COL9A1P20849 AC008745.1-201ENST00000604064 271 ntBASIC6.26□□□□□ -1.41
COL9A1P20849 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL9A1P20849 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL9A1P20849 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC6.26□□□□□ -1.41
COL9A1P20849 SPATA31C1-201ENST00000420021 3895 ntBASIC6.26□□□□□ -1.41
COL9A1P20849 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL9A1P20849 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL9A1P20849 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC6.26□□□□□ -1.41
COL9A1P20849 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
COL9A1P20849 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
COL9A1P20849 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL9A1P20849 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL9A1P20849 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL9A1P20849 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC6.26□□□□□ -1.41
COL9A1P20849 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL9A1P20849 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL9A1P20849 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL9A1P20849 NAV2-202ENST00000360655 10667 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL9A1P20849 AP003119.3-201ENST00000566747 4192 ntBASIC6.25□□□□□ -1.41
COL9A1P20849 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL9A1P20849 CCR9-201ENST00000355983 2653 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL9A1P20849 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
COL9A1P20849 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL9A1P20849 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
COL9A1P20849 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC6.25□□□□□ -1.41
COL9A1P20849 AL606537.1-201ENST00000607258 2011 ntBASIC6.25□□□□□ -1.41
COL9A1P20849 AL034546.1-201ENST00000623740 3693 ntBASIC6.25□□□□□ -1.41
COL9A1P20849 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL9A1P20849 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL9A1P20849 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL9A1P20849 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
COL9A1P20849 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL9A1P20849 ZNF81-204ENST00000376954 7933 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
COL9A1P20849 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL9A1P20849 U3.6-201ENST00000363622 211 ntBASIC6.25□□□□□ -1.41
COL9A1P20849 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC6.25□□□□□ -1.41
COL9A1P20849 RNU4-30P-201ENST00000410245 143 ntBASIC6.25□□□□□ -1.41
COL9A1P20849 RNA5SP156-201ENST00000410250 110 ntBASIC6.25□□□□□ -1.41
COL9A1P20849 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC6.25□□□□□ -1.41
COL9A1P20849 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC6.25□□□□□ -1.41
COL9A1P20849 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC6.25□□□□□ -1.41
COL9A1P20849 NUTF2P7-201ENST00000453086 375 ntBASIC6.25□□□□□ -1.41
COL9A1P20849 RANP2-201ENST00000456833 229 ntBASIC6.25□□□□□ -1.41
COL9A1P20849 RNU4ATAC15P-201ENST00000516415 126 ntBASIC6.25□□□□□ -1.41
COL9A1P20849 RNU7-110P-201ENST00000516891 62 ntBASIC6.25□□□□□ -1.41
COL9A1P20849 SNORA43.3-201ENST00000517240 103 ntBASIC6.25□□□□□ -1.41
COL9A1P20849 PARP1P2-201ENST00000556806 195 ntBASIC6.25□□□□□ -1.41
COL9A1P20849 TGIF1P1-201ENST00000558095 802 ntBASIC6.25□□□□□ -1.41
COL9A1P20849 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC6.25□□□□□ -1.41
COL9A1P20849 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC6.25□□□□□ -1.41
COL9A1P20849 AC009120.3-201ENST00000563335 499 ntBASIC6.25□□□□□ -1.41
COL9A1P20849 MIR4423-201ENST00000580922 80 ntBASIC6.25□□□□□ -1.41
COL9A1P20849 AL008718.3-201ENST00000610217 321 ntBASIC6.25□□□□□ -1.41
COL9A1P20849 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC6.25□□□□□ -1.41
COL9A1P20849 Y_RNA.778-201ENST00000620203 90 ntBASIC6.25□□□□□ -1.41
COL9A1P20849 MIR6758-201ENST00000620653 63 ntBASIC6.25□□□□□ -1.41
COL9A1P20849 AC099506.2-201ENST00000623074 221 ntBASIC6.25□□□□□ -1.41
COL9A1P20849 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC6.25□□□□□ -1.41
COL9A1P20849 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC6.25□□□□□ -1.41
COL9A1P20849 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL9A1P20849 GUCY1B2-204ENST00000531898 1979 ntBASIC6.25□□□□□ -1.41
COL9A1P20849 PRO1804-201ENST00000623780 2050 ntBASIC6.25□□□□□ -1.41
COL9A1P20849 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC6.25□□□□□ -1.41
COL9A1P20849 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC6.25□□□□□ -1.41
COL9A1P20849 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL9A1P20849 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL9A1P20849 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL9A1P20849 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
COL9A1P20849 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC6.25□□□□□ -1.41
COL9A1P20849 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC6.25□□□□□ -1.41
COL9A1P20849 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC6.24□□□□□ -1.41
COL9A1P20849 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL9A1P20849 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC6.24□□□□□ -1.41
COL9A1P20849 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL9A1P20849 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL9A1P20849 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL9A1P20849 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
COL9A1P20849 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL9A1P20849 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
COL9A1P20849 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC6.24□□□□□ -1.41
COL9A1P20849 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC6.24□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms