Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 TPMTP2-201ENST00000414372 726 ntBASIC3.58□□□□□ -1.84
MSH3P20585 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.58□□□□□ -1.84
MSH3P20585 RPS29P31-201ENST00000446147 164 ntBASIC3.58□□□□□ -1.84
MSH3P20585 HMGN2P21-201ENST00000447764 270 ntBASIC3.58□□□□□ -1.84
MSH3P20585 RAB9AP1-201ENST00000449393 573 ntBASIC3.58□□□□□ -1.84
MSH3P20585 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.58□□□□□ -1.84
MSH3P20585 CFTRP1-201ENST00000456646 183 ntBASIC3.58□□□□□ -1.84
MSH3P20585 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.58□□□□□ -1.84
MSH3P20585 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.58□□□□□ -1.84
MSH3P20585 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.58□□□□□ -1.84
MSH3P20585 RNU6-1231P-201ENST00000517185 103 ntBASIC3.58□□□□□ -1.84
MSH3P20585 RPL12P22-201ENST00000519073 490 ntBASIC3.58□□□□□ -1.84
MSH3P20585 RANP9-201ENST00000519957 271 ntBASIC3.58□□□□□ -1.84
MSH3P20585 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC3.58□□□□□ -1.84
MSH3P20585 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.58□□□□□ -1.84
MSH3P20585 AC060788.1-201ENST00000521318 469 ntBASIC3.58□□□□□ -1.84
MSH3P20585 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.58□□□□□ -1.84
MSH3P20585 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
MSH3P20585 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC3.58□□□□□ -1.84
MSH3P20585 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.58□□□□□ -1.84
MSH3P20585 AC103987.3-201ENST00000582071 292 ntBASIC3.58□□□□□ -1.84
MSH3P20585 AC007687.1-201ENST00000602704 304 ntBASIC3.58□□□□□ -1.84
MSH3P20585 AC007566.2-201ENST00000603642 413 ntBASIC3.58□□□□□ -1.84
MSH3P20585 AC006077.1-201ENST00000604746 343 ntBASIC3.58□□□□□ -1.84
MSH3P20585 AC064872.1-201ENST00000604823 1072 ntBASIC3.58□□□□□ -1.84
MSH3P20585 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.58□□□□□ -1.84
MSH3P20585 AL451064.1-201ENST00000607718 471 ntBASIC3.58□□□□□ -1.84
MSH3P20585 AC092140.2-201ENST00000618027 521 ntBASIC3.58□□□□□ -1.84
MSH3P20585 AC009318.4-201ENST00000620496 486 ntBASIC3.58□□□□□ -1.84
MSH3P20585 CYP3A51P-201ENST00000633513 256 ntBASIC3.58□□□□□ -1.84
MSH3P20585 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
MSH3P20585 GDI2P1-201ENST00000429312 1336 ntBASIC3.58□□□□□ -1.84
MSH3P20585 MFSD8-236ENST00000641509 4050 ntBASIC3.58□□□□□ -1.84
MSH3P20585 MTCO1P23-201ENST00000415223 1526 ntBASIC3.58□□□□□ -1.84
MSH3P20585 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
MSH3P20585 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
MSH3P20585 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
MSH3P20585 AC090337.1-201ENST00000579651 2074 ntBASIC3.58□□□□□ -1.84
MSH3P20585 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.58□□□□□ -1.84
MSH3P20585 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
MSH3P20585 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.57□□□□□ -1.84
MSH3P20585 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.57□□□□□ -1.84
MSH3P20585 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
MSH3P20585 RPL23AP57-201ENST00000332361 466 ntBASIC3.57□□□□□ -1.84
MSH3P20585 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
MSH3P20585 U3.4-201ENST00000363352 213 ntBASIC3.57□□□□□ -1.84
MSH3P20585 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
MSH3P20585 SNORA5A-201ENST00000384111 134 ntBASIC3.57□□□□□ -1.84
MSH3P20585 MIR200C-201ENST00000384980 68 ntBASIC3.57□□□□□ -1.84
MSH3P20585 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.57□□□□□ -1.84
MSH3P20585 PTMAP2-201ENST00000397627 327 ntBASIC3.57□□□□□ -1.84
MSH3P20585 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC3.57□□□□□ -1.84
MSH3P20585 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC3.57□□□□□ -1.84
MSH3P20585 CYCSP46-201ENST00000423569 204 ntBASIC3.57□□□□□ -1.84
MSH3P20585 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.57□□□□□ -1.84
MSH3P20585 AC005517.2-201ENST00000424673 553 ntBASIC3.57□□□□□ -1.84
MSH3P20585 SNRPEP7-201ENST00000438350 220 ntBASIC3.57□□□□□ -1.84
MSH3P20585 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC3.57□□□□□ -1.84
MSH3P20585 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.57□□□□□ -1.84
MSH3P20585 MTND5P14-201ENST00000441481 1267 ntBASIC3.57□□□□□ -1.84
MSH3P20585 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.57□□□□□ -1.84
MSH3P20585 COX6CP2-201ENST00000444980 225 ntBASIC3.57□□□□□ -1.84
MSH3P20585 EPS15P1-201ENST00000448836 336 ntBASIC3.57□□□□□ -1.84
MSH3P20585 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.57□□□□□ -1.84
MSH3P20585 SNORD105B-201ENST00000458770 79 ntBASIC3.57□□□□□ -1.84
MSH3P20585 AC091564.1-201ENST00000464563 479 ntBASIC3.57□□□□□ -1.84
MSH3P20585 PLGLA-201ENST00000465668 449 ntBASIC3.57□□□□□ -1.84
MSH3P20585 RPL31P50-201ENST00000471002 296 ntBASIC3.57□□□□□ -1.84
MSH3P20585 AC078785.3-201ENST00000476607 425 ntBASIC3.57□□□□□ -1.84
MSH3P20585 AC116337.2-201ENST00000477662 156 ntBASIC3.57□□□□□ -1.84
MSH3P20585 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
MSH3P20585 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.57□□□□□ -1.84
MSH3P20585 AC068724.1-201ENST00000487100 792 ntBASIC3.57□□□□□ -1.84
MSH3P20585 AC093767.1-201ENST00000504523 156 ntBASIC3.57□□□□□ -1.84
MSH3P20585 AC026784.1-201ENST00000507986 352 ntBASIC3.57□□□□□ -1.84
MSH3P20585 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.57□□□□□ -1.84
MSH3P20585 AC104619.4-201ENST00000510773 249 ntBASIC3.57□□□□□ -1.84
MSH3P20585 Y_RNA.695-201ENST00000516715 107 ntBASIC3.57□□□□□ -1.84
MSH3P20585 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.57□□□□□ -1.84
MSH3P20585 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.57□□□□□ -1.84
MSH3P20585 OR6C73P-201ENST00000546432 358 ntBASIC3.57□□□□□ -1.84
MSH3P20585 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC3.57□□□□□ -1.84
MSH3P20585 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.57□□□□□ -1.84
MSH3P20585 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.57□□□□□ -1.84
MSH3P20585 AC012414.6-201ENST00000568241 401 ntBASIC3.57□□□□□ -1.84
MSH3P20585 AC006270.2-201ENST00000578523 652 ntBASIC3.57□□□□□ -1.84
MSH3P20585 MIR4738-201ENST00000579134 87 ntBASIC3.57□□□□□ -1.84
MSH3P20585 MIR5047-201ENST00000579212 100 ntBASIC3.57□□□□□ -1.84
MSH3P20585 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.57□□□□□ -1.84
MSH3P20585 AC073544.2-201ENST00000601155 540 ntBASIC3.57□□□□□ -1.84
MSH3P20585 U73023.1-201ENST00000603134 700 ntBASIC3.57□□□□□ -1.84
MSH3P20585 RPL23AP92-201ENST00000603609 255 ntBASIC3.57□□□□□ -1.84
MSH3P20585 RN7SKP299-201ENST00000606679 301 ntBASIC3.57□□□□□ -1.84
MSH3P20585 AC080013.4-201ENST00000607624 649 ntBASIC3.57□□□□□ -1.84
MSH3P20585 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
MSH3P20585 AC039056.2-201ENST00000622261 511 ntBASIC3.57□□□□□ -1.84
MSH3P20585 AL034408.1-202ENST00000636088 415 ntBASIC3.57□□□□□ -1.84
MSH3P20585 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
MSH3P20585 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
MSH3P20585 AC007823.1-201ENST00000569932 1566 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms