Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS4AQ9UN37 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS4AQ9UN37 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS4AQ9UN37 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC4.12□□□□□ -1.75
VPS4AQ9UN37 AC107016.1-201ENST00000550463 337 ntBASIC4.12□□□□□ -1.75
VPS4AQ9UN37 AC136619.2-201ENST00000563361 631 ntBASIC4.12□□□□□ -1.75
VPS4AQ9UN37 AC090615.1-201ENST00000577519 154 ntBASIC4.12□□□□□ -1.75
VPS4AQ9UN37 HMGN1P30-201ENST00000589286 268 ntBASIC4.12□□□□□ -1.75
VPS4AQ9UN37 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
VPS4AQ9UN37 AC008250.2-201ENST00000615261 205 ntBASIC4.12□□□□□ -1.75
VPS4AQ9UN37 PISRT1-201ENST00000626175 531 ntBASIC4.12□□□□□ -1.75
VPS4AQ9UN37 ZNF962P-201ENST00000443465 3140 ntBASIC4.12□□□□□ -1.75
VPS4AQ9UN37 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
VPS4AQ9UN37 AC027287.1-201ENST00000553115 1453 ntBASIC4.11□□□□□ -1.75
VPS4AQ9UN37 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 FRG1BP-201ENST00000278882 761 ntBASIC4.11□□□□□ -1.75
VPS4AQ9UN37 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 SNORA70.4-201ENST00000365509 134 ntBASIC4.11□□□□□ -1.75
VPS4AQ9UN37 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 AL356421.1-201ENST00000403255 413 ntBASIC4.11□□□□□ -1.75
VPS4AQ9UN37 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 AL161631.1-201ENST00000417933 486 ntBASIC4.11□□□□□ -1.75
VPS4AQ9UN37 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 RPL17P49-201ENST00000443728 411 ntBASIC4.11□□□□□ -1.75
VPS4AQ9UN37 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 RN7SL542P-201ENST00000467147 294 ntBASIC4.11□□□□□ -1.75
VPS4AQ9UN37 S100A11P1-201ENST00000477525 312 ntBASIC4.11□□□□□ -1.75
VPS4AQ9UN37 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 AC109927.2-201ENST00000506416 303 ntBASIC4.11□□□□□ -1.75
VPS4AQ9UN37 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 AC006390.1-201ENST00000508068 283 ntBASIC4.11□□□□□ -1.75
VPS4AQ9UN37 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 RN7SKP244-201ENST00000516513 307 ntBASIC4.11□□□□□ -1.75
VPS4AQ9UN37 SNORA18.6-201ENST00000516792 115 ntBASIC4.11□□□□□ -1.75
VPS4AQ9UN37 RNU6-430P-201ENST00000517078 107 ntBASIC4.11□□□□□ -1.75
VPS4AQ9UN37 PTP4A1P6-201ENST00000531034 478 ntBASIC4.11□□□□□ -1.75
VPS4AQ9UN37 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 CKS1BP3-201ENST00000600888 237 ntBASIC4.11□□□□□ -1.75
VPS4AQ9UN37 AC008739.3-201ENST00000603262 127 ntBASIC4.11□□□□□ -1.75
VPS4AQ9UN37 AP003117.2-201ENST00000606010 545 ntBASIC4.11□□□□□ -1.75
VPS4AQ9UN37 U4.5-201ENST00000617137 123 ntBASIC4.11□□□□□ -1.75
VPS4AQ9UN37 AL160394.1-201ENST00000624765 724 ntBASIC4.11□□□□□ -1.75
VPS4AQ9UN37 OR5AK4P-201ENST00000635912 903 ntBASIC4.11□□□□□ -1.75
VPS4AQ9UN37 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 AC095050.2-201ENST00000510748 1458 ntBASIC4.11□□□□□ -1.75
VPS4AQ9UN37 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.11□□□□□ -1.75
VPS4AQ9UN37 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 OR4G2P-201ENST00000328113 903 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 SNORD51-201ENST00000384320 80 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 SNORA70E-201ENST00000384492 135 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 MIR200C-201ENST00000384980 68 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 SNORD66.1-201ENST00000391230 76 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 RNU6ATAC25P-201ENST00000408798 117 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 MIR1183-201ENST00000408856 89 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 C1DP2-201ENST00000418167 426 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 MTCYBP24-201ENST00000420387 1106 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 EIF1P1-201ENST00000421436 341 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 EIF1P3-201ENST00000423841 334 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AL589872.1-201ENST00000426602 288 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AC073614.1-201ENST00000438690 650 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 OFD1P4Y-201ENST00000455273 1179 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AP1S2P1-201ENST00000457344 379 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AC053481.1-201ENST00000467217 306 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 RPL35AP15-201ENST00000468042 339 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AC012170.1-201ENST00000495139 359 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 KCTD9P5-201ENST00000504141 1170 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AC139783.2-201ENST00000504847 1145 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AC108475.1-201ENST00000507880 950 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AC011352.1-201ENST00000512300 793 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AC005798.1-201ENST00000513715 387 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AC022483.1-201ENST00000514020 567 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms