Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 C4BPAP1-201ENST00000415474 1893 ntBASIC4.89□□□□□ -1.63
RNF4P78317 AC092747.4-201ENST00000620519 1861 ntBASIC4.89□□□□□ -1.63
RNF4P78317 NEAT1-202ENST00000501122 22743 ntBASIC4.89□□□□□ -1.63
RNF4P78317 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
RNF4P78317 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
RNF4P78317 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
RNF4P78317 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
RNF4P78317 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
RNF4P78317 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
RNF4P78317 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
RNF4P78317 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
RNF4P78317 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.89□□□□□ -1.63
RNF4P78317 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
RNF4P78317 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
RNF4P78317 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.88□□□□□ -1.63
RNF4P78317 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.88□□□□□ -1.63
RNF4P78317 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
RNF4P78317 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
RNF4P78317 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
RNF4P78317 Y_RNA.28-201ENST00000362554 111 ntBASIC4.88□□□□□ -1.63
RNF4P78317 RNU6-1309P-201ENST00000363305 108 ntBASIC4.88□□□□□ -1.63
RNF4P78317 RN7SKP153-201ENST00000365026 316 ntBASIC4.88□□□□□ -1.63
RNF4P78317 RNU6-701P-201ENST00000384059 107 ntBASIC4.88□□□□□ -1.63
RNF4P78317 TANK-203ENST00000402568 878 ntTSL 5 BASIC4.88□□□□□ -1.63
RNF4P78317 RNU4-34P-201ENST00000410431 124 ntBASIC4.88□□□□□ -1.63
RNF4P78317 BX682237.1-201ENST00000415016 335 ntBASIC4.88□□□□□ -1.63
RNF4P78317 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.88□□□□□ -1.63
RNF4P78317 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.88□□□□□ -1.63
RNF4P78317 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC4.88□□□□□ -1.63
RNF4P78317 RPL21P112-201ENST00000434403 463 ntBASIC4.88□□□□□ -1.63
RNF4P78317 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.88□□□□□ -1.63
RNF4P78317 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC4.88□□□□□ -1.63
RNF4P78317 AL137792.2-201ENST00000443484 235 ntBASIC4.88□□□□□ -1.63
RNF4P78317 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC4.88□□□□□ -1.63
RNF4P78317 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.88□□□□□ -1.63
RNF4P78317 HMGB3P22-202ENST00000451823 572 ntBASIC4.88□□□□□ -1.63
RNF4P78317 AL389915.2-201ENST00000454576 441 ntBASIC4.88□□□□□ -1.63
RNF4P78317 MTND5P22-201ENST00000458380 195 ntBASIC4.88□□□□□ -1.63
RNF4P78317 RN7SL727P-201ENST00000482164 296 ntBASIC4.88□□□□□ -1.63
RNF4P78317 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.88□□□□□ -1.63
RNF4P78317 RN7SL346P-201ENST00000491561 294 ntBASIC4.88□□□□□ -1.63
RNF4P78317 AC008638.1-201ENST00000506035 866 ntBASIC4.88□□□□□ -1.63
RNF4P78317 RNU6-123P-201ENST00000516163 102 ntBASIC4.88□□□□□ -1.63
RNF4P78317 AC012400.1-201ENST00000518452 381 ntBASIC4.88□□□□□ -1.63
RNF4P78317 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC4.88□□□□□ -1.63
RNF4P78317 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC4.88□□□□□ -1.63
RNF4P78317 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.88□□□□□ -1.63
RNF4P78317 AC024940.3-201ENST00000538551 316 ntBASIC4.88□□□□□ -1.63
RNF4P78317 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC4.88□□□□□ -1.63
RNF4P78317 OR1F2P-201ENST00000570470 933 ntBASIC4.88□□□□□ -1.63
RNF4P78317 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.88□□□□□ -1.63
RNF4P78317 AC023043.2-201ENST00000589678 1026 ntBASIC4.88□□□□□ -1.63
RNF4P78317 CYP2C61P-201ENST00000604072 290 ntBASIC4.88□□□□□ -1.63
RNF4P78317 AL162431.4-201ENST00000604674 411 ntBASIC4.88□□□□□ -1.63
RNF4P78317 TUG1_2.1-201ENST00000614234 87 ntBASIC4.88□□□□□ -1.63
RNF4P78317 AL355365.1-201ENST00000616480 294 ntBASIC4.88□□□□□ -1.63
RNF4P78317 AC103705.1-201ENST00000619013 241 ntBASIC4.88□□□□□ -1.63
RNF4P78317 AL078596.1-201ENST00000624856 447 ntBASIC4.88□□□□□ -1.63
RNF4P78317 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC4.88□□□□□ -1.63
RNF4P78317 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
RNF4P78317 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.88□□□□□ -1.63
RNF4P78317 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC4.88□□□□□ -1.63
RNF4P78317 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
RNF4P78317 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.88□□□□□ -1.63
RNF4P78317 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.88□□□□□ -1.63
RNF4P78317 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
RNF4P78317 PABPC1P7-201ENST00000413177 1513 ntBASIC4.87□□□□□ -1.63
RNF4P78317 ALB-202ENST00000401494 1659 ntTSL 5 BASIC4.87□□□□□ -1.63
RNF4P78317 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
RNF4P78317 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
RNF4P78317 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC4.87□□□□□ -1.63
RNF4P78317 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.87□□□□□ -1.63
RNF4P78317 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
RNF4P78317 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
RNF4P78317 SNORA17.1-201ENST00000362945 126 ntBASIC4.87□□□□□ -1.63
RNF4P78317 RNU6-1105P-201ENST00000384774 107 ntBASIC4.87□□□□□ -1.63
RNF4P78317 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
RNF4P78317 Y_RNA.605-201ENST00000410577 105 ntBASIC4.87□□□□□ -1.63
RNF4P78317 RNU4-78P-201ENST00000410940 126 ntBASIC4.87□□□□□ -1.63
RNF4P78317 RNU6-387P-201ENST00000411331 105 ntBASIC4.87□□□□□ -1.63
RNF4P78317 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC4.87□□□□□ -1.63
RNF4P78317 RPL12P46-201ENST00000436610 195 ntBASIC4.87□□□□□ -1.63
RNF4P78317 MTCO3P45-201ENST00000443036 613 ntBASIC4.87□□□□□ -1.63
RNF4P78317 MED28P3-201ENST00000444288 531 ntBASIC4.87□□□□□ -1.63
RNF4P78317 AL162389.1-201ENST00000449233 177 ntBASIC4.87□□□□□ -1.63
RNF4P78317 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC4.87□□□□□ -1.63
RNF4P78317 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC4.87□□□□□ -1.63
RNF4P78317 AC005532.2-201ENST00000467154 373 ntBASIC4.87□□□□□ -1.63
RNF4P78317 DYNLL1P5-201ENST00000467158 270 ntBASIC4.87□□□□□ -1.63
RNF4P78317 SNRPCP2-201ENST00000504370 475 ntBASIC4.87□□□□□ -1.63
RNF4P78317 AC026801.2-201ENST00000515352 425 ntBASIC4.87□□□□□ -1.63
RNF4P78317 RNU6-685P-201ENST00000517088 95 ntBASIC4.87□□□□□ -1.63
RNF4P78317 Y_RNA.720-201ENST00000517166 92 ntBASIC4.87□□□□□ -1.63
RNF4P78317 RNU6-988P-201ENST00000519081 107 ntBASIC4.87□□□□□ -1.63
RNF4P78317 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC4.87□□□□□ -1.63
RNF4P78317 AC107918.3-201ENST00000533272 382 ntBASIC4.87□□□□□ -1.63
RNF4P78317 DYNLL1P4-201ENST00000549314 266 ntBASIC4.87□□□□□ -1.63
RNF4P78317 AL121576.1-201ENST00000556055 276 ntBASIC4.87□□□□□ -1.63
RNF4P78317 CLMN-206ENST00000556441 452 ntTSL 5 BASIC4.87□□□□□ -1.63
RNF4P78317 MIR4512-201ENST00000583257 77 ntBASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 154.8 ms