Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC2.77□□□□□ -1.97
COL18A1P39060 ZNF736P10Y-201ENST00000403990 1110 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
COL18A1P39060 SDCBPP3-201ENST00000419629 891 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC2.77□□□□□ -1.97
COL18A1P39060 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC2.77□□□□□ -1.97
COL18A1P39060 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC2.77□□□□□ -1.97
COL18A1P39060 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC2.77□□□□□ -1.97
COL18A1P39060 RN7SKP82-201ENST00000516786 223 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 HIGD1AP10-201ENST00000527837 282 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC2.77□□□□□ -1.97
COL18A1P39060 AC023043.3-201ENST00000593113 385 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 AC006254.3-201ENST00000603353 884 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC2.77□□□□□ -1.97
COL18A1P39060 C2orf27A-204ENST00000623058 969 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
COL18A1P39060 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
COL18A1P39060 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
COL18A1P39060 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC2.76□□□□□ -1.97
COL18A1P39060 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
COL18A1P39060 AC010680.1-201ENST00000590024 3590 ntBASIC2.76□□□□□ -1.97
COL18A1P39060 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.76□□□□□ -1.97
COL18A1P39060 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC2.76□□□□□ -1.97
COL18A1P39060 FABP5P6-201ENST00000510588 409 ntBASIC2.76□□□□□ -1.97
COL18A1P39060 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC2.76□□□□□ -1.97
COL18A1P39060 RNA5SP445-201ENST00000515889 115 ntBASIC2.76□□□□□ -1.97
COL18A1P39060 NF1P5-201ENST00000588287 448 ntBASIC2.76□□□□□ -1.97
COL18A1P39060 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC2.76□□□□□ -1.97
COL18A1P39060 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.76□□□□□ -1.97
COL18A1P39060 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
COL18A1P39060 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.76□□□□□ -1.97
COL18A1P39060 RNU6-185P-201ENST00000384421 107 ntBASIC2.75□□□□□ -1.97
COL18A1P39060 Y_RNA.508-201ENST00000384502 114 ntBASIC2.75□□□□□ -1.97
COL18A1P39060 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC2.75□□□□□ -1.97
COL18A1P39060 MED6P1-201ENST00000439659 713 ntBASIC2.75□□□□□ -1.97
COL18A1P39060 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC2.75□□□□□ -1.97
COL18A1P39060 AC003989.2-201ENST00000440224 169 ntBASIC2.75□□□□□ -1.97
COL18A1P39060 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.75□□□□□ -1.97
COL18A1P39060 MTND2P8-201ENST00000450555 1025 ntBASIC2.75□□□□□ -1.97
COL18A1P39060 CFTRP1-201ENST00000456646 183 ntBASIC2.75□□□□□ -1.97
COL18A1P39060 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC2.75□□□□□ -1.97
COL18A1P39060 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC2.75□□□□□ -1.97
COL18A1P39060 MIR6132-201ENST00000622083 109 ntBASIC2.75□□□□□ -1.97
COL18A1P39060 AP003072.4-201ENST00000624580 310 ntBASIC2.75□□□□□ -1.97
COL18A1P39060 AC084035.1-201ENST00000634543 607 ntBASIC2.75□□□□□ -1.97
COL18A1P39060 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
COL18A1P39060 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
COL18A1P39060 AL161431.1-201ENST00000618966 4205 ntBASIC2.75□□□□□ -1.97
COL18A1P39060 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
COL18A1P39060 MIR6073-201ENST00000352083 89 ntBASIC2.74□□□□□ -1.97
COL18A1P39060 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC2.74□□□□□ -1.97
COL18A1P39060 HMGB1P26-201ENST00000452520 628 ntBASIC2.74□□□□□ -1.97
COL18A1P39060 CEACAMP4-201ENST00000457676 421 ntBASIC2.74□□□□□ -1.97
COL18A1P39060 RNU7-170P-201ENST00000459303 61 ntBASIC2.74□□□□□ -1.97
COL18A1P39060 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC2.74□□□□□ -1.97
COL18A1P39060 NDUFB4P9-201ENST00000511646 388 ntBASIC2.74□□□□□ -1.97
COL18A1P39060 RNU6-1053P-201ENST00000515930 101 ntBASIC2.74□□□□□ -1.97
COL18A1P39060 ZKSCAN7P1-201ENST00000543668 673 ntBASIC2.74□□□□□ -1.97
COL18A1P39060 AC110588.1-201ENST00000559699 137 ntBASIC2.74□□□□□ -1.97
COL18A1P39060 AC128687.1-201ENST00000605304 619 ntBASIC2.74□□□□□ -1.97
COL18A1P39060 AC093673.2-201ENST00000609674 331 ntBASIC2.74□□□□□ -1.97
COL18A1P39060 AK6-205ENST00000618980 483 ntTSL 2 BASIC2.74□□□□□ -1.97
COL18A1P39060 AC092650.2-201ENST00000619984 902 ntBASIC2.74□□□□□ -1.97
COL18A1P39060 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
COL18A1P39060 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC2.74□□□□□ -1.97
COL18A1P39060 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC2.74□□□□□ -1.97
COL18A1P39060 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
COL18A1P39060 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.74□□□□□ -1.97
COL18A1P39060 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
COL18A1P39060 DHFRP5-201ENST00000406944 564 ntBASIC2.74□□□□□ -1.97
COL18A1P39060 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.74□□□□□ -1.97
COL18A1P39060 RPL7P54-201ENST00000438336 674 ntBASIC2.74□□□□□ -1.97
COL18A1P39060 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC2.74□□□□□ -1.97
COL18A1P39060 SNORD13-201ENST00000459299 104 ntBASIC2.74□□□□□ -1.97
COL18A1P39060 AP000893.1-201ENST00000474462 794 ntBASIC2.74□□□□□ -1.97
COL18A1P39060 OR52A4P-203ENST00000498233 1014 ntBASIC2.74□□□□□ -1.97
COL18A1P39060 RNU6-889P-201ENST00000517189 103 ntBASIC2.74□□□□□ -1.97
COL18A1P39060 TRAV11-201ENST00000539512 339 ntBASIC2.74□□□□□ -1.97
COL18A1P39060 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.74□□□□□ -1.97
COL18A1P39060 AC009570.1-201ENST00000609599 745 ntBASIC2.74□□□□□ -1.97
COL18A1P39060 Xist_exon1.1-201ENST00000618930 85 ntBASIC2.74□□□□□ -1.97
COL18A1P39060 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.74□□□□□ -1.97
COL18A1P39060 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.74□□□□□ -1.97
COL18A1P39060 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
COL18A1P39060 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL18A1P39060 DEFA7P-201ENST00000382676 285 ntBASIC2.73□□□□□ -1.97
COL18A1P39060 MTCO3P31-201ENST00000405526 789 ntBASIC2.73□□□□□ -1.97
COL18A1P39060 AC092832.1-201ENST00000422934 400 ntBASIC2.73□□□□□ -1.97
COL18A1P39060 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.73□□□□□ -1.97
COL18A1P39060 USP9YP8-201ENST00000441913 500 ntBASIC2.73□□□□□ -1.97
COL18A1P39060 AP002345.1-201ENST00000456493 928 ntBASIC2.73□□□□□ -1.97
COL18A1P39060 SNORD108-201ENST00000459332 71 ntBASIC2.73□□□□□ -1.97
COL18A1P39060 USP9YP5-201ENST00000511770 630 ntBASIC2.73□□□□□ -1.97
COL18A1P39060 AC104997.1-201ENST00000519761 717 ntBASIC2.73□□□□□ -1.97
COL18A1P39060 AC023158.1-201ENST00000561632 1025 ntBASIC2.73□□□□□ -1.97
COL18A1P39060 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC2.73□□□□□ -1.97
COL18A1P39060 MTND4LP24-201ENST00000572277 291 ntBASIC2.73□□□□□ -1.97
COL18A1P39060 OR4K7P-201ENST00000580232 945 ntBASIC2.73□□□□□ -1.97
COL18A1P39060 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 138.1 ms