Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RNU4-35P-201ENST00000362588 141 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 snoZ40.1-201ENST00000364540 72 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 SNORA72.3-201ENST00000365074 132 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 RNA5SP120-201ENST00000410900 112 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 AC109780.2-201ENST00000413467 845 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 DBIP2-201ENST00000419076 262 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 OR1AA1P-201ENST00000419597 916 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.33□□□□□ -1.88
PTPN4P29074 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.33□□□□□ -1.88
PTPN4P29074 HIGD1AP11-201ENST00000438361 280 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.33□□□□□ -1.88
PTPN4P29074 VN1R10P-201ENST00000447106 875 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 AL009048.1-201ENST00000450437 298 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 RPL26P28-201ENST00000451325 435 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 RFC5P1-201ENST00000454419 874 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 RPL23AP31-201ENST00000456160 467 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 DUXAP8-207ENST00000456786 622 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC3.33□□□□□ -1.88
PTPN4P29074 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.33□□□□□ -1.88
PTPN4P29074 RNU6-1225P-201ENST00000516336 65 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.33□□□□□ -1.88
PTPN4P29074 AP001804.3-201ENST00000525146 880 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 OR10V3P-201ENST00000525712 725 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 OR4P1P-201ENST00000530808 1136 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.33□□□□□ -1.88
PTPN4P29074 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.33□□□□□ -1.88
PTPN4P29074 AC126177.3-201ENST00000551839 688 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.33□□□□□ -1.88
PTPN4P29074 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.33□□□□□ -1.88
PTPN4P29074 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.33□□□□□ -1.88
PTPN4P29074 AL049838.1-201ENST00000563647 981 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 AC138915.2-201ENST00000569776 97 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 MTND1P8-201ENST00000571424 950 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.33□□□□□ -1.88
PTPN4P29074 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.33□□□□□ -1.88
PTPN4P29074 AC027449.1-201ENST00000608890 407 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 AP001521.1-201ENST00000609150 300 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 AL157392.4-201ENST00000609756 345 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 DUXAP10-204ENST00000612052 616 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 AC023158.2-201ENST00000614876 543 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 AC006111.3-201ENST00000622137 383 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 AC040168.1-201ENST00000623594 991 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 AP001002.2-201ENST00000625137 386 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 MIR3651-201ENST00000630427 90 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.33□□□□□ -1.88
PTPN4P29074 AC118273.1-201ENST00000525324 3006 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.33□□□□□ -1.88
PTPN4P29074 AL049780.3-201ENST00000624612 1583 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
PTPN4P29074 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PTPN4P29074 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
PTPN4P29074 AC093831.2-201ENST00000624393 3427 ntBASIC3.32□□□□□ -1.88
PTPN4P29074 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
PTPN4P29074 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
PTPN4P29074 Y_RNA.472-201ENST00000384322 102 ntBASIC3.32□□□□□ -1.88
PTPN4P29074 RNU1-101P-201ENST00000391171 127 ntBASIC3.32□□□□□ -1.88
PTPN4P29074 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC3.32□□□□□ -1.88
PTPN4P29074 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.32□□□□□ -1.88
PTPN4P29074 YPEL5P1-201ENST00000419731 367 ntBASIC3.32□□□□□ -1.88
PTPN4P29074 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.32□□□□□ -1.88
PTPN4P29074 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.32□□□□□ -1.88
PTPN4P29074 MTND2P20-201ENST00000440805 661 ntBASIC3.32□□□□□ -1.88
PTPN4P29074 AC092757.1-201ENST00000467293 467 ntBASIC3.32□□□□□ -1.88
PTPN4P29074 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.32□□□□□ -1.88
PTPN4P29074 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.32□□□□□ -1.88
PTPN4P29074 KLHL2P1-201ENST00000508691 521 ntBASIC3.32□□□□□ -1.88
PTPN4P29074 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.32□□□□□ -1.88
PTPN4P29074 SNORA31.8-201ENST00000516327 108 ntBASIC3.32□□□□□ -1.88
PTPN4P29074 RNU6-711P-201ENST00000517255 106 ntBASIC3.32□□□□□ -1.88
PTPN4P29074 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.32□□□□□ -1.88
PTPN4P29074 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.32□□□□□ -1.88
PTPN4P29074 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.32□□□□□ -1.88
PTPN4P29074 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.32□□□□□ -1.88
PTPN4P29074 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
PTPN4P29074 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.32□□□□□ -1.88
PTPN4P29074 RPP40P2-201ENST00000603596 712 ntBASIC3.32□□□□□ -1.88
PTPN4P29074 RNU4-5P-201ENST00000607255 135 ntBASIC3.32□□□□□ -1.88
PTPN4P29074 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.32□□□□□ -1.88
PTPN4P29074 AC002076.2-201ENST00000617362 122 ntBASIC3.32□□□□□ -1.88
PTPN4P29074 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC3.32□□□□□ -1.88
PTPN4P29074 AC022509.4-201ENST00000621404 572 ntBASIC3.32□□□□□ -1.88
PTPN4P29074 U4.6-201ENST00000621618 127 ntBASIC3.32□□□□□ -1.88
PTPN4P29074 GMFB-210ENST00000628554 639 ntTSL 4 BASIC3.32□□□□□ -1.88
PTPN4P29074 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PTPN4P29074 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
PTPN4P29074 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
PTPN4P29074 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
PTPN4P29074 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
PTPN4P29074 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.31□□□□□ -1.88
PTPN4P29074 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
PTPN4P29074 ZNF29P-201ENST00000225587 168 ntBASIC3.31□□□□□ -1.88
PTPN4P29074 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
PTPN4P29074 SNORD51-201ENST00000384320 80 ntBASIC3.31□□□□□ -1.88
PTPN4P29074 SNORD116-12-201ENST00000384468 92 ntBASIC3.31□□□□□ -1.88
PTPN4P29074 SNORA40.2-201ENST00000390847 128 ntBASIC3.31□□□□□ -1.88
PTPN4P29074 U3.19-201ENST00000390893 196 ntBASIC3.31□□□□□ -1.88
PTPN4P29074 CYCSP45-201ENST00000402289 315 ntBASIC3.31□□□□□ -1.88
PTPN4P29074 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.31□□□□□ -1.88
PTPN4P29074 MTATP6P20-201ENST00000414147 562 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms