Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC120349.2-201ENST00000625002 298 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 MIR3651-201ENST00000630427 90 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXD4P09016 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HOXD4P09016 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
HOXD4P09016 CDR1-202ENST00000625883 1485 ntBASIC3.26□□□□□ -1.89
HOXD4P09016 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.26□□□□□ -1.89
HOXD4P09016 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.26□□□□□ -1.89
HOXD4P09016 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXD4P09016 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXD4P09016 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.26□□□□□ -1.89
HOXD4P09016 MTND4P34-201ENST00000572715 1371 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXD4P09016 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXD4P09016 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXD4P09016 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HOXD4P09016 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
HOXD4P09016 AC093010.3-201ENST00000570269 15214 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
HOXD4P09016 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXD4P09016 Y_RNA.25-201ENST00000362528 102 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 SNORD9-201ENST00000362566 104 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 SNORA4.1-201ENST00000364263 144 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HOXD4P09016 RNU6-657P-201ENST00000383904 107 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 RPL7P60-201ENST00000397636 735 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
HOXD4P09016 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXD4P09016 BX842559.1-201ENST00000419615 532 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 MTCYBP24-201ENST00000420387 1106 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 AC012498.1-201ENST00000424037 437 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 RPL36P19-201ENST00000430744 301 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXD4P09016 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXD4P09016 UBE2D3P4-201ENST00000441973 436 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 RBMY2UP-201ENST00000453474 324 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 AC023598.1-201ENST00000472521 361 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 NCOR1P1-202ENST00000486162 291 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXD4P09016 AC078918.1-201ENST00000498515 228 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXD4P09016 MTCO3P28-201ENST00000513351 515 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXD4P09016 RNA5SP380-201ENST00000517190 98 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.25□□□□□ -1.89
HOXD4P09016 SLC2A13P1-201ENST00000531560 322 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXD4P09016 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXD4P09016 AC125611.1-201ENST00000549563 229 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 TRAV37-201ENST00000553906 342 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXD4P09016 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXD4P09016 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXD4P09016 AP005136.1-201ENST00000579765 429 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 AC090616.5-202ENST00000582111 297 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 SNORD39.3-201ENST00000584451 71 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXD4P09016 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXD4P09016 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.25□□□□□ -1.89
HOXD4P09016 AC040904.1-201ENST00000590850 223 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXD4P09016 AC018714.1-201ENST00000605028 208 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 AC112220.3-201ENST00000605502 502 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 HSPE1P14-201ENST00000605812 302 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 AC006270.3-201ENST00000605967 1036 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 AC245297.2-201ENST00000610119 565 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 AC004223.4-201ENST00000612426 332 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 AL354976.1-201ENST00000613843 387 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 AL136981.2-201ENST00000617319 734 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 AL732618.1-201ENST00000623251 301 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 AC119674.1-207ENST00000641355 633 ntBASIC3.25□□□□□ -1.89
HOXD4P09016 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXD4P09016 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
HOXD4P09016 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
HOXD4P09016 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXD4P09016 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXD4P09016 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
HOXD4P09016 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXD4P09016 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXD4P09016 AC087359.1-201ENST00000508335 1740 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 AC058791.1-201ENST00000608412 3198 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD4P09016 RNU6-805P-201ENST00000365643 106 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 AP002088.1-201ENST00000382740 395 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD4P09016 SSXP10-201ENST00000402595 565 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXD4P09016 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD4P09016 PIGPP2-201ENST00000411569 458 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 TIMM9P2-201ENST00000419324 266 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXD4P09016 DNAJA1P2-201ENST00000421360 1197 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.24□□□□□ -1.89
HOXD4P09016 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.24□□□□□ -1.89
HOXD4P09016 AC005517.2-201ENST00000424673 553 ntBASIC3.24□□□□□ -1.89
HOXD4P09016 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXD4P09016 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXD4P09016 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXD4P09016 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms