Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.2□□□□□ -1.9
NPHP4O75161 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.2□□□□□ -1.9
NPHP4O75161 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC3.2□□□□□ -1.9
NPHP4O75161 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.2□□□□□ -1.9
NPHP4O75161 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC3.2□□□□□ -1.9
NPHP4O75161 AP001180.3-201ENST00000582221 145 ntBASIC3.2□□□□□ -1.9
NPHP4O75161 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.2□□□□□ -1.9
NPHP4O75161 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.2□□□□□ -1.9
NPHP4O75161 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
NPHP4O75161 MTND5P7-201ENST00000413558 1798 ntBASIC3.2□□□□□ -1.9
NPHP4O75161 AL118496.1-201ENST00000440201 1812 ntBASIC3.2□□□□□ -1.9
NPHP4O75161 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
NPHP4O75161 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
NPHP4O75161 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
NPHP4O75161 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
NPHP4O75161 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.2□□□□□ -1.9
NPHP4O75161 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
NPHP4O75161 RNU6-321P-201ENST00000410912 106 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 MTCO3P4-201ENST00000419236 787 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 PTP4A1P7-201ENST00000423476 514 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 MTATP6P11-201ENST00000428071 670 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 AC092427.1-202ENST00000430569 476 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 RPS15AP28-201ENST00000435088 386 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 RPL37P6-202ENST00000464216 403 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
NPHP4O75161 DCAF13P1-201ENST00000495256 1330 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 RPL38P4-201ENST00000502376 214 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 RNU6-760P-201ENST00000516078 97 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC3.19□□□□□ -1.9
NPHP4O75161 AK6P1-201ENST00000540219 478 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC3.19□□□□□ -1.9
NPHP4O75161 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.19□□□□□ -1.9
NPHP4O75161 NOP56P3-201ENST00000549457 385 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 AL627309.6-201ENST00000606857 840 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
NPHP4O75161 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC3.19□□□□□ -1.9
NPHP4O75161 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
NPHP4O75161 AC234782.4-201ENST00000417646 1048 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 ATG3P1-201ENST00000419507 911 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.19□□□□□ -1.9
NPHP4O75161 AC004866.2-201ENST00000438285 481 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC3.19□□□□□ -1.9
NPHP4O75161 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC3.19□□□□□ -1.9
NPHP4O75161 IGHV3-76-201ENST00000522465 295 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 ZDHHC20P3-201ENST00000531576 336 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 AC007536.1-201ENST00000533382 349 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 GNAI2P1-201ENST00000541815 315 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC3.19□□□□□ -1.9
NPHP4O75161 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC3.19□□□□□ -1.9
NPHP4O75161 AP001521.1-201ENST00000609150 300 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 AC110792.4-201ENST00000609843 298 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 AC012531.5-201ENST00000611375 151 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 CR589904.2-201ENST00000612533 440 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 U6.48-201ENST00000618523 106 ntBASIC3.19□□□□□ -1.9
NPHP4O75161 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
NPHP4O75161 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.18□□□□□ -1.9
NPHP4O75161 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
NPHP4O75161 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
NPHP4O75161 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
NPHP4O75161 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
NPHP4O75161 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
NPHP4O75161 Y_RNA.355-201ENST00000365462 98 ntBASIC3.18□□□□□ -1.9
NPHP4O75161 NPM1P10-201ENST00000398310 865 ntBASIC3.18□□□□□ -1.9
NPHP4O75161 CCNB2P1-201ENST00000399411 1150 ntBASIC3.18□□□□□ -1.9
NPHP4O75161 SNORA11.4-201ENST00000408823 129 ntBASIC3.18□□□□□ -1.9
NPHP4O75161 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.18□□□□□ -1.9
NPHP4O75161 AC124916.1-201ENST00000444020 547 ntBASIC3.18□□□□□ -1.9
NPHP4O75161 AC110792.2-201ENST00000510278 224 ntBASIC3.18□□□□□ -1.9
NPHP4O75161 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC3.18□□□□□ -1.9
NPHP4O75161 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.18□□□□□ -1.9
NPHP4O75161 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC3.18□□□□□ -1.9
NPHP4O75161 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.18□□□□□ -1.9
NPHP4O75161 SUMO2P14-201ENST00000604488 293 ntBASIC3.18□□□□□ -1.9
NPHP4O75161 MIR8070-201ENST00000616510 88 ntBASIC3.18□□□□□ -1.9
NPHP4O75161 AK6-205ENST00000618980 483 ntTSL 2 BASIC3.18□□□□□ -1.9
NPHP4O75161 AC010378.1-201ENST00000619270 362 ntBASIC3.18□□□□□ -1.9
NPHP4O75161 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
NPHP4O75161 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
NPHP4O75161 AC009501.3-201ENST00000605001 1352 ntBASIC3.17□□□□□ -1.9
NPHP4O75161 AL139811.1-201ENST00000424779 2299 ntBASIC3.17□□□□□ -1.9
NPHP4O75161 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
NPHP4O75161 RNU6-98P-201ENST00000384173 107 ntBASIC3.17□□□□□ -1.9
NPHP4O75161 RNU2-2P-201ENST00000410396 191 ntBASIC3.17□□□□□ -1.9
NPHP4O75161 RNU6-1140P-201ENST00000410517 106 ntBASIC3.17□□□□□ -1.9
NPHP4O75161 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC3.17□□□□□ -1.9
NPHP4O75161 FO393419.3-201ENST00000428741 282 ntBASIC3.17□□□□□ -1.9
NPHP4O75161 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.17□□□□□ -1.9
NPHP4O75161 HGF-207ENST00000453018 721 ntTSL 3 BASIC3.17□□□□□ -1.9
NPHP4O75161 SSR3-208ENST00000496050 579 ntTSL 4 BASIC3.17□□□□□ -1.9
NPHP4O75161 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.17□□□□□ -1.9
NPHP4O75161 XKRY-201ENST00000510392 1100 ntBASIC3.17□□□□□ -1.9
NPHP4O75161 PTP4A1P6-201ENST00000531034 478 ntBASIC3.17□□□□□ -1.9
NPHP4O75161 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.17□□□□□ -1.9
NPHP4O75161 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.17□□□□□ -1.9
NPHP4O75161 AC012414.2-201ENST00000559474 187 ntBASIC3.17□□□□□ -1.9
NPHP4O75161 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.17□□□□□ -1.9
NPHP4O75161 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC3.17□□□□□ -1.9
NPHP4O75161 AC242628.1-201ENST00000606810 391 ntBASIC3.17□□□□□ -1.9
NPHP4O75161 AC103710.1-201ENST00000610003 901 ntBASIC3.17□□□□□ -1.9
NPHP4O75161 U2.15-201ENST00000611544 191 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms