Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC015688.2-201ENST00000584523 262 ntBASIC3.25□□□□□ -1.89
SDC3O75056 AC012669.1-201ENST00000603209 283 ntBASIC3.25□□□□□ -1.89
SDC3O75056 AP001330.4-201ENST00000604350 154 ntBASIC3.25□□□□□ -1.89
SDC3O75056 AC016877.3-201ENST00000606778 504 ntBASIC3.25□□□□□ -1.89
SDC3O75056 RNU4-5P-201ENST00000607255 135 ntBASIC3.25□□□□□ -1.89
SDC3O75056 AL157392.4-201ENST00000609756 345 ntBASIC3.25□□□□□ -1.89
SDC3O75056 AL360181.4-201ENST00000621752 134 ntBASIC3.25□□□□□ -1.89
SDC3O75056 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.25□□□□□ -1.89
SDC3O75056 AC120349.2-201ENST00000625002 298 ntBASIC3.25□□□□□ -1.89
SDC3O75056 AC091925.2-201ENST00000625059 256 ntBASIC3.25□□□□□ -1.89
SDC3O75056 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
SDC3O75056 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SDC3O75056 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.25□□□□□ -1.89
SDC3O75056 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SDC3O75056 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.24□□□□□ -1.89
SDC3O75056 MTCO1P23-201ENST00000415223 1526 ntBASIC3.24□□□□□ -1.89
SDC3O75056 AC106754.1-201ENST00000562632 1513 ntBASIC3.24□□□□□ -1.89
SDC3O75056 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.24□□□□□ -1.89
SDC3O75056 CDR1-202ENST00000625883 1485 ntBASIC3.24□□□□□ -1.89
SDC3O75056 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SDC3O75056 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SDC3O75056 RNU6-560P-201ENST00000364007 108 ntBASIC3.24□□□□□ -1.89
SDC3O75056 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SDC3O75056 RNU6-413P-201ENST00000384115 107 ntBASIC3.24□□□□□ -1.89
SDC3O75056 ERHP2-201ENST00000402323 299 ntBASIC3.24□□□□□ -1.89
SDC3O75056 AL450338.1-201ENST00000407987 512 ntBASIC3.24□□□□□ -1.89
SDC3O75056 RNU2-15P-201ENST00000410692 191 ntBASIC3.24□□□□□ -1.89
SDC3O75056 RNU2-42P-201ENST00000410697 113 ntBASIC3.24□□□□□ -1.89
SDC3O75056 RNU4-22P-201ENST00000411058 166 ntBASIC3.24□□□□□ -1.89
SDC3O75056 AL356320.2-201ENST00000417263 507 ntBASIC3.24□□□□□ -1.89
SDC3O75056 YPEL5P1-201ENST00000419731 367 ntBASIC3.24□□□□□ -1.89
SDC3O75056 AC012065.2-201ENST00000421295 375 ntBASIC3.24□□□□□ -1.89
SDC3O75056 AL513175.2-201ENST00000422071 443 ntBASIC3.24□□□□□ -1.89
SDC3O75056 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.24□□□□□ -1.89
SDC3O75056 ZDHHC20P2-201ENST00000424108 429 ntBASIC3.24□□□□□ -1.89
SDC3O75056 DUTP6-201ENST00000425573 462 ntBASIC3.24□□□□□ -1.89
SDC3O75056 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.24□□□□□ -1.89
SDC3O75056 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.24□□□□□ -1.89
SDC3O75056 EEF1A1P39-201ENST00000440791 250 ntBASIC3.24□□□□□ -1.89
SDC3O75056 VN1R10P-201ENST00000447106 875 ntBASIC3.24□□□□□ -1.89
SDC3O75056 AC007327.1-201ENST00000447461 264 ntBASIC3.24□□□□□ -1.89
SDC3O75056 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC3.24□□□□□ -1.89
SDC3O75056 RPS23P3-201ENST00000470993 430 ntBASIC3.24□□□□□ -1.89
SDC3O75056 AC012181.1-201ENST00000479895 423 ntBASIC3.24□□□□□ -1.89
SDC3O75056 AC096751.1-202ENST00000502691 1067 ntBASIC3.24□□□□□ -1.89
SDC3O75056 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.24□□□□□ -1.89
SDC3O75056 KLHL2P1-201ENST00000508691 521 ntBASIC3.24□□□□□ -1.89
SDC3O75056 AC026412.2-201ENST00000512270 1075 ntBASIC3.24□□□□□ -1.89
SDC3O75056 AP006245.1-201ENST00000522549 120 ntBASIC3.24□□□□□ -1.89
SDC3O75056 SNRPGP16-201ENST00000533275 226 ntBASIC3.24□□□□□ -1.89
SDC3O75056 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SDC3O75056 HIGD1AP1-201ENST00000550979 275 ntBASIC3.24□□□□□ -1.89
SDC3O75056 HIGD1AP17-201ENST00000554576 276 ntBASIC3.24□□□□□ -1.89
SDC3O75056 EIF4BP1-201ENST00000554881 351 ntBASIC3.24□□□□□ -1.89
SDC3O75056 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.24□□□□□ -1.89
SDC3O75056 BNIP3P26-201ENST00000600827 554 ntBASIC3.24□□□□□ -1.89
SDC3O75056 RPL23AP92-201ENST00000603609 255 ntBASIC3.24□□□□□ -1.89
SDC3O75056 AC069304.2-201ENST00000605154 435 ntBASIC3.24□□□□□ -1.89
SDC3O75056 AC138932.5-201ENST00000617759 563 ntBASIC3.24□□□□□ -1.89
SDC3O75056 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC3.24□□□□□ -1.89
SDC3O75056 AC022960.3-201ENST00000619794 441 ntBASIC3.24□□□□□ -1.89
SDC3O75056 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.24□□□□□ -1.89
SDC3O75056 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.24□□□□□ -1.89
SDC3O75056 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SDC3O75056 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.24□□□□□ -1.89
SDC3O75056 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
SDC3O75056 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.24□□□□□ -1.89
SDC3O75056 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.24□□□□□ -1.89
SDC3O75056 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.24□□□□□ -1.89
SDC3O75056 AL513302.2-201ENST00000562313 1842 ntBASIC3.23□□□□□ -1.89
SDC3O75056 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.23□□□□□ -1.89
SDC3O75056 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
SDC3O75056 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
SDC3O75056 MIR422A-201ENST00000362286 90 ntBASIC3.23□□□□□ -1.89
SDC3O75056 AL591034.1-201ENST00000407447 340 ntBASIC3.23□□□□□ -1.89
SDC3O75056 RNU6-584P-201ENST00000410350 95 ntBASIC3.23□□□□□ -1.89
SDC3O75056 AC099677.1-201ENST00000420575 175 ntBASIC3.23□□□□□ -1.89
SDC3O75056 USP9YP24-201ENST00000434374 697 ntBASIC3.23□□□□□ -1.89
SDC3O75056 MTND4LP10-201ENST00000435146 291 ntBASIC3.23□□□□□ -1.89
SDC3O75056 MTND2P20-201ENST00000440805 661 ntBASIC3.23□□□□□ -1.89
SDC3O75056 USP9YP17-201ENST00000444617 696 ntBASIC3.23□□□□□ -1.89
SDC3O75056 AL357552.1-201ENST00000445254 415 ntBASIC3.23□□□□□ -1.89
SDC3O75056 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.23□□□□□ -1.89
SDC3O75056 MTCO2P25-201ENST00000447065 681 ntBASIC3.23□□□□□ -1.89
SDC3O75056 MRPS31P2-201ENST00000451581 518 ntBASIC3.23□□□□□ -1.89
SDC3O75056 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SDC3O75056 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SDC3O75056 DUXAP8-207ENST00000456786 622 ntBASIC3.23□□□□□ -1.89
SDC3O75056 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SDC3O75056 RPS4XP22-201ENST00000480755 780 ntBASIC3.23□□□□□ -1.89
SDC3O75056 OR4G11P-201ENST00000492842 939 ntBASIC3.23□□□□□ -1.89
SDC3O75056 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.23□□□□□ -1.89
SDC3O75056 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.23□□□□□ -1.89
SDC3O75056 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3.23□□□□□ -1.89
SDC3O75056 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.23□□□□□ -1.89
SDC3O75056 IGHV3-76-201ENST00000522465 295 ntBASIC3.23□□□□□ -1.89
SDC3O75056 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.23□□□□□ -1.89
SDC3O75056 AP001636.2-201ENST00000525517 696 ntBASIC3.23□□□□□ -1.89
SDC3O75056 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.23□□□□□ -1.89
SDC3O75056 AADACP1-206ENST00000561502 1193 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms