Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC4.73□□□□□ -1.65
CBX4O00257 AC103710.2-201ENST00000609912 942 ntBASIC4.73□□□□□ -1.65
CBX4O00257 AC012409.3-201ENST00000611343 981 ntBASIC4.73□□□□□ -1.65
CBX4O00257 AC093838.1-201ENST00000613014 469 ntBASIC4.73□□□□□ -1.65
CBX4O00257 AP003122.6-201ENST00000623831 495 ntBASIC4.73□□□□□ -1.65
CBX4O00257 AP005264.7-201ENST00000625003 745 ntBASIC4.73□□□□□ -1.65
CBX4O00257 MIR6715B-201ENST00000637172 77 ntBASIC4.73□□□□□ -1.65
CBX4O00257 MAPK10-349ENST00000641767 3661 ntBASIC4.73□□□□□ -1.65
CBX4O00257 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC4.73□□□□□ -1.65
CBX4O00257 AC104118.1-201ENST00000607625 1589 ntBASIC4.73□□□□□ -1.65
CBX4O00257 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
CBX4O00257 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.73□□□□□ -1.65
CBX4O00257 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CBX4O00257 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.73□□□□□ -1.65
CBX4O00257 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CBX4O00257 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CBX4O00257 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC4.72□□□□□ -1.65
CBX4O00257 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.72□□□□□ -1.65
CBX4O00257 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC4.72□□□□□ -1.65
CBX4O00257 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CBX4O00257 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
CBX4O00257 RNU6-223P-201ENST00000362830 107 ntBASIC4.72□□□□□ -1.65
CBX4O00257 RNU6-1249P-201ENST00000363237 111 ntBASIC4.72□□□□□ -1.65
CBX4O00257 Y_RNA.160-201ENST00000363677 92 ntBASIC4.72□□□□□ -1.65
CBX4O00257 SNORD113.2-201ENST00000364166 89 ntBASIC4.72□□□□□ -1.65
CBX4O00257 SNORA69-201ENST00000383895 132 ntBASIC4.72□□□□□ -1.65
CBX4O00257 RNU6-39P-201ENST00000384344 107 ntBASIC4.72□□□□□ -1.65
CBX4O00257 MIR558-201ENST00000384920 94 ntBASIC4.72□□□□□ -1.65
CBX4O00257 RNU6-754P-201ENST00000391166 107 ntBASIC4.72□□□□□ -1.65
CBX4O00257 RNU6-1158P-201ENST00000391167 107 ntBASIC4.72□□□□□ -1.65
CBX4O00257 AL359643.1-201ENST00000404109 423 ntBASIC4.72□□□□□ -1.65
CBX4O00257 MIR1271-201ENST00000408537 86 ntBASIC4.72□□□□□ -1.65
CBX4O00257 RNA5SP118-201ENST00000410385 109 ntBASIC4.72□□□□□ -1.65
CBX4O00257 RNU4-25P-201ENST00000410569 230 ntBASIC4.72□□□□□ -1.65
CBX4O00257 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC4.72□□□□□ -1.65
CBX4O00257 RPL17P36-201ENST00000420302 549 ntBASIC4.72□□□□□ -1.65
CBX4O00257 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC4.72□□□□□ -1.65
CBX4O00257 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CBX4O00257 RPS15AP9-201ENST00000439856 381 ntBASIC4.72□□□□□ -1.65
CBX4O00257 AC016691.1-201ENST00000441321 413 ntBASIC4.72□□□□□ -1.65
CBX4O00257 AL121871.1-201ENST00000443413 436 ntBASIC4.72□□□□□ -1.65
CBX4O00257 DDX3P2-201ENST00000446138 111 ntBASIC4.72□□□□□ -1.65
CBX4O00257 SNRPGP6-201ENST00000451124 220 ntBASIC4.72□□□□□ -1.65
CBX4O00257 NUTF2P7-201ENST00000453086 375 ntBASIC4.72□□□□□ -1.65
CBX4O00257 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC4.72□□□□□ -1.65
CBX4O00257 AC005008.1-201ENST00000456151 612 ntBASIC4.72□□□□□ -1.65
CBX4O00257 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC4.72□□□□□ -1.65
CBX4O00257 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.72□□□□□ -1.65
CBX4O00257 AC135721.1-201ENST00000497954 479 ntBASIC4.72□□□□□ -1.65
CBX4O00257 ACTR3BP4-201ENST00000503033 1244 ntBASIC4.72□□□□□ -1.65
CBX4O00257 AC018710.1-201ENST00000506509 158 ntBASIC4.72□□□□□ -1.65
CBX4O00257 AC007016.1-201ENST00000512110 244 ntBASIC4.72□□□□□ -1.65
CBX4O00257 AC026402.1-201ENST00000513642 170 ntBASIC4.72□□□□□ -1.65
CBX4O00257 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC4.72□□□□□ -1.65
CBX4O00257 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.72□□□□□ -1.65
CBX4O00257 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC4.72□□□□□ -1.65
CBX4O00257 AP001781.1-201ENST00000530977 207 ntBASIC4.72□□□□□ -1.65
CBX4O00257 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.72□□□□□ -1.65
CBX4O00257 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.72□□□□□ -1.65
CBX4O00257 HIF1AP1-201ENST00000553642 175 ntBASIC4.72□□□□□ -1.65
CBX4O00257 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.72□□□□□ -1.65
CBX4O00257 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC4.72□□□□□ -1.65
CBX4O00257 AC055876.1-202ENST00000567053 138 ntBASIC4.72□□□□□ -1.65
CBX4O00257 MIR1254-2-201ENST00000579553 63 ntBASIC4.72□□□□□ -1.65
CBX4O00257 AC090616.5-202ENST00000582111 297 ntBASIC4.72□□□□□ -1.65
CBX4O00257 AC091135.1-201ENST00000585943 307 ntBASIC4.72□□□□□ -1.65
CBX4O00257 AC069234.5-201ENST00000611056 416 ntBASIC4.72□□□□□ -1.65
CBX4O00257 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC4.72□□□□□ -1.65
CBX4O00257 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.72□□□□□ -1.65
CBX4O00257 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.72□□□□□ -1.65
CBX4O00257 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
CBX4O00257 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.72□□□□□ -1.65
CBX4O00257 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
CBX4O00257 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CBX4O00257 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CBX4O00257 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CBX4O00257 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CBX4O00257 AL391684.1-202ENST00000641293 1636 ntBASIC4.72□□□□□ -1.65
CBX4O00257 AC108751.5-201ENST00000492880 1336 ntBASIC4.72□□□□□ -1.65
CBX4O00257 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
CBX4O00257 MTND4P12-201ENST00000498999 1377 ntBASIC4.71□□□□□ -1.66
CBX4O00257 Y_RNA.70-201ENST00000362886 110 ntBASIC4.71□□□□□ -1.66
CBX4O00257 RNA5SP447-201ENST00000363749 119 ntBASIC4.71□□□□□ -1.66
CBX4O00257 RNU6-74P-201ENST00000384235 107 ntBASIC4.71□□□□□ -1.66
CBX4O00257 RNU6-606P-201ENST00000384721 111 ntBASIC4.71□□□□□ -1.66
CBX4O00257 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
CBX4O00257 AL109755.1-201ENST00000401791 649 ntBASIC4.71□□□□□ -1.66
CBX4O00257 AL592291.1-201ENST00000403830 352 ntBASIC4.71□□□□□ -1.66
CBX4O00257 RNU4-65P-201ENST00000410473 140 ntBASIC4.71□□□□□ -1.66
CBX4O00257 SNRPFP1-201ENST00000414761 252 ntBASIC4.71□□□□□ -1.66
CBX4O00257 RPL21P111-201ENST00000418453 477 ntBASIC4.71□□□□□ -1.66
CBX4O00257 MED13P1-201ENST00000428342 171 ntBASIC4.71□□□□□ -1.66
CBX4O00257 AC004975.1-201ENST00000428733 208 ntBASIC4.71□□□□□ -1.66
CBX4O00257 AC016696.1-201ENST00000446949 318 ntBASIC4.71□□□□□ -1.66
CBX4O00257 AC006480.1-201ENST00000449887 378 ntBASIC4.71□□□□□ -1.66
CBX4O00257 AC007967.1-201ENST00000455422 1159 ntBASIC4.71□□□□□ -1.66
CBX4O00257 AL356010.1-201ENST00000456364 102 ntBASIC4.71□□□□□ -1.66
CBX4O00257 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC4.71□□□□□ -1.66
CBX4O00257 SCARNA10-201ENST00000459255 330 ntBASIC4.71□□□□□ -1.66
CBX4O00257 AC007537.2-201ENST00000472093 511 ntBASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms