Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 IGHVII-60-1-201ENST00000519079 256 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 AC122688.1-201ENST00000541494 223 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 AL670379.6-201ENST00000603753 252 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 AL670379.1-201ENST00000604752 252 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 AC116667.1-201ENST00000604855 2072 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 AL670379.5-201ENST00000605253 252 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 AL670379.8-201ENST00000605353 252 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 AL670379.7-201ENST00000605823 252 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 AL512329.2-201ENST00000607350 548 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 AC009570.1-201ENST00000609599 745 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 MIR6778-201ENST00000617912 73 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 AC073593.1-201ENST00000624500 411 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 AC144833.1-201ENST00000567953 4089 ntBASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HIF3AQ9Y2N7 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 AC006206.1-201ENST00000544842 3387 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 Y_RNA.64-201ENST00000362845 102 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 Y_RNA.126-201ENST00000363382 111 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 SNORA23-201ENST00000365128 182 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 RNU6-146P-201ENST00000384602 108 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 RNU11-4P-201ENST00000391149 133 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 RPL21P24-201ENST00000413752 448 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 AC115283.1-201ENST00000427353 400 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 AC010655.1-201ENST00000449336 292 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 FABP5P13-201ENST00000452144 328 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 SETP20-201ENST00000457046 852 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 NXT1P1-201ENST00000458481 316 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 snoU109.4-201ENST00000458953 143 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 AC010683.1-201ENST00000473673 378 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 AC004453.1-201ENST00000487895 408 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 RNU6-941P-201ENST00000516346 108 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 RNU6-307P-201ENST00000516743 106 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 APAF1-207ENST00000547743 651 ntTSL 3 BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 AC091516.1-201ENST00000549191 703 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 AC025423.5-201ENST00000550230 219 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 AC026371.1-201ENST00000551867 419 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 MIR4311-201ENST00000580794 100 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 AL022394.1-201ENST00000606979 292 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 AL139124.1-201ENST00000609123 421 ntBASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HIF3AQ9Y2N7 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.09□□□□□ -1.6
HIF3AQ9Y2N7 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.6
HIF3AQ9Y2N7 AC007938.2-201ENST00000604666 2634 ntBASIC5.09□□□□□ -1.6
HIF3AQ9Y2N7 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.09□□□□□ -1.6
HIF3AQ9Y2N7 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HIF3AQ9Y2N7 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.08□□□□□ -1.6
HIF3AQ9Y2N7 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HIF3AQ9Y2N7 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
HIF3AQ9Y2N7 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.08□□□□□ -1.6
HIF3AQ9Y2N7 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HIF3AQ9Y2N7 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
HIF3AQ9Y2N7 RN7SKP145-201ENST00000363291 303 ntBASIC5.08□□□□□ -1.6
HIF3AQ9Y2N7 RNU6-770P-201ENST00000363929 105 ntBASIC5.08□□□□□ -1.6
HIF3AQ9Y2N7 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
HIF3AQ9Y2N7 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.08□□□□□ -1.6
HIF3AQ9Y2N7 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC5.08□□□□□ -1.6
HIF3AQ9Y2N7 AL035660.1-201ENST00000422041 222 ntBASIC5.08□□□□□ -1.6
HIF3AQ9Y2N7 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.08□□□□□ -1.6
HIF3AQ9Y2N7 AL360081.1-201ENST00000428299 555 ntBASIC5.08□□□□□ -1.6
HIF3AQ9Y2N7 AC097713.2-201ENST00000430199 356 ntBASIC5.08□□□□□ -1.6
HIF3AQ9Y2N7 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.08□□□□□ -1.6
HIF3AQ9Y2N7 RPL12P11-201ENST00000439970 501 ntBASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms