Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 DBF4P1-201ENST00000412976 1892 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 SNRPEP3-201ENST00000338402 276 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 RNU6-1249P-201ENST00000363237 111 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 RNU5D-1-201ENST00000363299 116 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 RNU6-1242P-201ENST00000391052 103 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 RPL21P75-201ENST00000396599 483 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 RPL21P28-201ENST00000401418 483 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AL592114.1-201ENST00000403842 483 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 RNU2-28P-201ENST00000410457 189 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 RNU2-42P-201ENST00000410697 113 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 RNU4-22P-201ENST00000411058 166 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 OFD1P1Y-201ENST00000411756 1225 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AC245054.2-201ENST00000415639 319 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 OR1AA1P-201ENST00000419597 916 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 SDR42E1P3-201ENST00000438345 502 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AC092393.1-201ENST00000439625 742 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 RABEPKP1-201ENST00000440529 1026 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 RPS12P18-201ENST00000442381 270 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 EXOSC3P1-201ENST00000448649 500 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 PDSS1P2-201ENST00000449397 678 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 RPL21P39-201ENST00000463605 483 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AC104472.2-201ENST00000469035 601 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 RPS23P3-201ENST00000470993 430 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AC011979.1-201ENST00000472300 483 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 RPL21P93-201ENST00000480465 489 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AC233702.1-201ENST00000482905 502 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AC087190.1-201ENST00000484462 480 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 RPL7P38-201ENST00000488396 739 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AC093591.1-201ENST00000491435 481 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 RPL21P129-201ENST00000491732 478 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 OR4G11P-201ENST00000492842 939 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 RPL21P16-201ENST00000495531 483 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AC008837.2-201ENST00000513076 418 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 RNU6-27P-201ENST00000516146 107 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AC104986.1-201ENST00000517978 436 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AC087808.1-201ENST00000520501 361 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AP003385.6-201ENST00000531603 374 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 REXO2-218ENST00000544827 880 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AC008962.1-201ENST00000605729 304 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AC024933.1-201ENST00000608472 348 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 uc_338.25-201ENST00000613756 156 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AC018755.4-201ENST00000619715 454 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AL353748.2-201ENST00000622148 471 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 CR392039.5-201ENST00000623201 510 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AC120349.2-201ENST00000625002 298 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 AC091925.2-201ENST00000625059 256 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 LRRC77P-213ENST00000637727 880 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 MTND5P24-201ENST00000438892 1767 ntBASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC54Q8NEL0 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 OFD1P5Y-201ENST00000447585 2590 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 RNA5SP124-201ENST00000362739 110 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 RNU6-837P-201ENST00000391056 108 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 AL139281.1-201ENST00000422120 335 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 RPL23AP76-201ENST00000441860 458 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 AL009048.1-201ENST00000450437 298 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 RFC5P1-201ENST00000454419 874 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 OR6K1P-201ENST00000456766 971 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 WDR78-207ENST00000488333 613 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 AC006499.5-201ENST00000505037 514 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 HSPD1P15-201ENST00000505573 1122 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 RN7SKP43-201ENST00000516173 320 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 IGKV3OR22-2-201ENST00000517943 313 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 AC021451.1-201ENST00000523498 1129 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 AC011611.1-201ENST00000552179 197 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 SETP2-201ENST00000553886 926 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 MTCYBP27-201ENST00000555160 670 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 GTF2IP8-201ENST00000560687 584 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 176.2 ms