Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 Y_RNA.780-201ENST00000617336 101 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 Y_RNA.801-201ENST00000619005 101 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 AL732618.1-201ENST00000623251 301 ntBASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 CARF-208ENST00000428585 2513 ntTSL 2 BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
USHBP1Q8N6Y0 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 AC022031.1-201ENST00000585985 2593 ntBASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 RNY3P3-201ENST00000363816 102 ntBASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 RPS20P2-201ENST00000402520 389 ntBASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 AL359704.1-201ENST00000411586 781 ntBASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 AL353193.1-201ENST00000421444 268 ntBASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 GTF2IP20-201ENST00000431663 360 ntBASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 RPS26P40-201ENST00000435209 294 ntBASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 ARPC3P5-201ENST00000448802 534 ntBASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 HMGN3P1-201ENST00000453847 193 ntBASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 RNU6-420P-201ENST00000458780 107 ntBASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 RNU6-488P-201ENST00000515918 99 ntBASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 FTH1P11-201ENST00000517577 551 ntBASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 OR4A12P-201ENST00000530847 918 ntBASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 AC017100.2-201ENST00000584628 355 ntBASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 AL050343.2-201ENST00000607338 280 ntBASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 AC019278.1-201ENST00000623516 479 ntBASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 TEX41-300ENST00000631048 69 ntTSL 5 BASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 ZNF33BP1-201ENST00000452497 1834 ntBASIC5.53□□□□□ -1.52
USHBP1Q8N6Y0 AC116667.1-201ENST00000604855 2072 ntBASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 AC024560.2-201ENST00000507981 1497 ntBASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 5S_rRNA.1-201ENST00000364415 116 ntBASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 RNU6-282P-201ENST00000365357 103 ntBASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 AC127391.1-201ENST00000411737 98 ntBASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 AC234782.4-201ENST00000417646 1048 ntBASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 NDUFA5P4-201ENST00000436704 385 ntBASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 AC006011.1-201ENST00000442758 349 ntBASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 AL358232.1-201ENST00000448030 501 ntBASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 RPL37P3-201ENST00000456825 293 ntBASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 snoU13.22-201ENST00000459428 104 ntBASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 AC010301.1-201ENST00000473936 355 ntBASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 ACTR3BP4-201ENST00000503033 1244 ntBASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 AP003181.2-201ENST00000528941 181 ntBASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 AC120057.2-201ENST00000571520 271 ntBASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 AC022432.1-201ENST00000595739 310 ntBASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 VN1R80P-201ENST00000597126 338 ntBASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 AP001836.1-201ENST00000604675 523 ntBASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 AL133173.2-201ENST00000614270 90 ntBASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 AC068722.2-201ENST00000618734 544 ntBASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 AC092162.3-201ENST00000624511 1624 ntBASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC5.52□□□□□ -1.53
USHBP1Q8N6Y0 USP9YP4-201ENST00000424401 1745 ntBASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 MIR208A-201ENST00000362287 71 ntBASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 RNU6-332P-201ENST00000391193 108 ntBASIC5.51□□□□□ -1.53
USHBP1Q8N6Y0 MRPL42P2-201ENST00000403169 426 ntBASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms