Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MIR323A-201ENST00000362199 86 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 SNORA51.2-201ENST00000364595 132 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 AL136372.1-201ENST00000403060 228 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 SNORA11.5-201ENST00000408163 128 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 RPL23AP26-201ENST00000412728 464 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 AL159169.1-201ENST00000421119 127 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 AC069157.1-201ENST00000421749 137 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 AL163193.1-201ENST00000444895 788 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 AC104634.1-201ENST00000452720 462 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 AC022364.2-201ENST00000457963 554 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 RPL31P13-201ENST00000484151 370 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 SCARNA24.1-201ENST00000516465 137 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 HMGB1P40-201ENST00000525121 540 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 SNRPGP16-201ENST00000533275 226 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 AP003034.1-201ENST00000534621 422 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 GLUD1P4-201ENST00000590914 418 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 AL606834.2-201ENST00000602954 668 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 AL391646.1-201ENST00000603860 190 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 AC008966.2-201ENST00000606157 453 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 HOTTIP_3.1-201ENST00000619957 337 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 C2orf27A-204ENST00000623058 969 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 AC009161.2-201ENST00000624626 138 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 EXOC5P1-201ENST00000510543 1969 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 AC092326.2-201ENST00000624772 1561 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 RNA5SP90-201ENST00000364801 99 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 MIR105-1-201ENST00000385222 81 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AC110754.1-201ENST00000399740 601 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 TXNP7-201ENST00000406296 293 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 OR4K12P-201ENST00000406538 961 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 MIR548F1-201ENST00000408667 84 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 RN7SKP114-201ENST00000410327 279 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 UQCRBP1-201ENST00000421129 336 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 USP9YP18-201ENST00000425912 695 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 MTCO2P19-201ENST00000427513 598 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 FTH1P6-201ENST00000430768 320 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 UBE2V1P8-201ENST00000437166 265 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 RPL26P6-201ENST00000440913 438 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AC006480.1-201ENST00000449887 378 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 RPL23AP31-201ENST00000456160 467 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 SNORD97-201ENST00000459187 142 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AC011352.1-201ENST00000512300 793 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 SNORA31.22-201ENST00000517204 135 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 RNU6-840P-201ENST00000517275 65 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AC008489.1-201ENST00000524271 483 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AC209154.1-201ENST00000582156 337 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AC098848.2-201ENST00000588023 330 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AC012507.3-201ENST00000603556 477 ntBASIC3.91□□□□□ -1.78
CCDC28AQ8IWP9 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms