Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXA4Q00056 AC128687.2-201ENST00000609657 566 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 AC015871.5-202ENST00000623252 701 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 U3.53-201ENST00000628922 216 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 AC100810.6-201ENST00000638068 285 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXA4Q00056 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
HOXA4Q00056 AP001642.1-201ENST00000624727 2117 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
HOXA4Q00056 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
HOXA4Q00056 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA4Q00056 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXA4Q00056 CARF-208ENST00000428585 2513 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXA4Q00056 AC006020.1-201ENST00000420179 1854 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
HOXA4Q00056 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC3.88□□□□□ -1.79
HOXA4Q00056 SAGE2P-201ENST00000420011 2126 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA4Q00056 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA4Q00056 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA4Q00056 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXA4Q00056 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA4Q00056 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
HOXA4Q00056 NACAP2-201ENST00000318548 624 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
HOXA4Q00056 RNU6-989P-201ENST00000362756 107 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 RNU4-73P-201ENST00000363164 141 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 RNU4-76P-201ENST00000364509 141 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 RNU6-339P-201ENST00000384310 107 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 SNORD96B-201ENST00000386148 79 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
HOXA4Q00056 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
HOXA4Q00056 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA4Q00056 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA4Q00056 AP000580.1-201ENST00000404439 358 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 RNA5SP118-201ENST00000410385 109 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 RNU2-47P-201ENST00000410649 186 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA4Q00056 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXA4Q00056 AC008065.1-201ENST00000428525 348 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA4Q00056 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXA4Q00056 RPL36AP53-201ENST00000432891 316 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 RPS20P5-201ENST00000434808 360 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 RPL23AP93-201ENST00000440847 484 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA4Q00056 AC140076.1-201ENST00000449897 361 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXA4Q00056 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXA4Q00056 RNU7-63P-201ENST00000459054 62 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 AC078785.3-201ENST00000476607 425 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 AC020890.1-201ENST00000491837 504 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA4Q00056 HSPD1P15-201ENST00000505573 1122 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 FTH1P21-201ENST00000512179 511 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA4Q00056 HIGD1AP3-201ENST00000515857 278 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 RN7SKP82-201ENST00000516786 223 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 RNU6-798P-201ENST00000516912 103 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 RNU6-410P-201ENST00000517006 107 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXA4Q00056 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA4Q00056 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXA4Q00056 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA4Q00056 AL133271.1-201ENST00000538229 291 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXA4Q00056 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXA4Q00056 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA4Q00056 AC007424.1-203ENST00000554613 687 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA4Q00056 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXA4Q00056 AC010525.2-201ENST00000590920 195 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 AP001429.1-201ENST00000602568 530 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA4Q00056 AL121992.2-201ENST00000606262 256 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 AC020634.1-201ENST00000608701 549 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 AC006329.2-201ENST00000611491 394 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA4Q00056 AC010133.1-201ENST00000615809 842 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 AC007742.2-201ENST00000618226 398 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 AP000346.3-201ENST00000622821 210 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA4Q00056 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXA4Q00056 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA4Q00056 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
HOXA4Q00056 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA4Q00056 IQCB2P-201ENST00000401788 1633 ntBASIC3.88□□□□□ -1.79
HOXA4Q00056 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA4Q00056 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC3.87□□□□□ -1.79
HOXA4Q00056 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA4Q00056 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXA4Q00056 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.87□□□□□ -1.79
HOXA4Q00056 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXA4Q00056 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA4Q00056 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA4Q00056 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXA4Q00056 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC3.87□□□□□ -1.79
HOXA4Q00056 AC006026.1-201ENST00000444025 1803 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
HOXA4Q00056 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms