Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 MTCYBP23-201ENST00000558717 1102 ntBASIC3.29□□□□□ -1.88
SDC3O75056 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.29□□□□□ -1.88
SDC3O75056 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.29□□□□□ -1.88
SDC3O75056 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.29□□□□□ -1.88
SDC3O75056 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SDC3O75056 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.29□□□□□ -1.88
SDC3O75056 AC138915.2-201ENST00000569776 97 ntBASIC3.29□□□□□ -1.88
SDC3O75056 MIR4325-201ENST00000583049 90 ntBASIC3.29□□□□□ -1.88
SDC3O75056 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SDC3O75056 AL035411.2-201ENST00000604022 421 ntBASIC3.29□□□□□ -1.88
SDC3O75056 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.29□□□□□ -1.88
SDC3O75056 AP001521.1-201ENST00000609150 300 ntBASIC3.29□□□□□ -1.88
SDC3O75056 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.29□□□□□ -1.88
SDC3O75056 AC073348.1-201ENST00000623002 331 ntBASIC3.29□□□□□ -1.88
SDC3O75056 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.29□□□□□ -1.88
SDC3O75056 AC091152.2-201ENST00000591628 2569 ntBASIC3.29□□□□□ -1.88
SDC3O75056 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SDC3O75056 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SDC3O75056 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.29□□□□□ -1.88
SDC3O75056 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
SDC3O75056 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.28□□□□□ -1.88
SDC3O75056 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.28□□□□□ -1.88
SDC3O75056 AC138915.3-201ENST00000562908 1389 ntBASIC3.28□□□□□ -1.88
SDC3O75056 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
SDC3O75056 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SDC3O75056 PWAR6-201ENST00000552334 4618 ntBASIC3.28□□□□□ -1.88
SDC3O75056 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SDC3O75056 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC3.28□□□□□ -1.88
SDC3O75056 RNU6-657P-201ENST00000383904 107 ntBASIC3.28□□□□□ -1.88
SDC3O75056 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
SDC3O75056 RN7SKP111-201ENST00000410349 271 ntBASIC3.28□□□□□ -1.88
SDC3O75056 MRPS36P1-201ENST00000421291 307 ntBASIC3.28□□□□□ -1.88
SDC3O75056 AC006989.1-201ENST00000427212 131 ntBASIC3.28□□□□□ -1.88
SDC3O75056 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC3.28□□□□□ -1.88
SDC3O75056 AL831737.1-201ENST00000441288 271 ntBASIC3.28□□□□□ -1.88
SDC3O75056 AL589880.1-201ENST00000448271 287 ntBASIC3.28□□□□□ -1.88
SDC3O75056 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
SDC3O75056 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.28□□□□□ -1.88
SDC3O75056 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.28□□□□□ -1.88
SDC3O75056 AC108734.3-201ENST00000481241 1165 ntBASIC3.28□□□□□ -1.88
SDC3O75056 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC3.28□□□□□ -1.88
SDC3O75056 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SDC3O75056 AC110794.1-201ENST00000505816 425 ntBASIC3.28□□□□□ -1.88
SDC3O75056 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.28□□□□□ -1.88
SDC3O75056 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.28□□□□□ -1.88
SDC3O75056 RNU1-61P-201ENST00000516107 151 ntBASIC3.28□□□□□ -1.88
SDC3O75056 RNU6-1225P-201ENST00000516336 65 ntBASIC3.28□□□□□ -1.88
SDC3O75056 RN7SKP31-201ENST00000516354 278 ntBASIC3.28□□□□□ -1.88
SDC3O75056 AC026333.2-201ENST00000542164 106 ntBASIC3.28□□□□□ -1.88
SDC3O75056 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.28□□□□□ -1.88
SDC3O75056 AC125611.1-201ENST00000549563 229 ntBASIC3.28□□□□□ -1.88
SDC3O75056 AC005476.1-201ENST00000554427 397 ntBASIC3.28□□□□□ -1.88
SDC3O75056 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.28□□□□□ -1.88
SDC3O75056 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.28□□□□□ -1.88
SDC3O75056 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.28□□□□□ -1.88
SDC3O75056 AP001029.3-201ENST00000588063 596 ntBASIC3.28□□□□□ -1.88
SDC3O75056 AC245884.10-201ENST00000597355 337 ntBASIC3.28□□□□□ -1.88
SDC3O75056 RPP40P2-201ENST00000603596 712 ntBASIC3.28□□□□□ -1.88
SDC3O75056 AC055876.5-201ENST00000605667 259 ntBASIC3.28□□□□□ -1.88
SDC3O75056 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.28□□□□□ -1.88
SDC3O75056 AC135507.2-201ENST00000612443 309 ntBASIC3.28□□□□□ -1.88
SDC3O75056 AC016597.2-201ENST00000613256 341 ntBASIC3.28□□□□□ -1.88
SDC3O75056 AC231759.1-201ENST00000616455 597 ntBASIC3.28□□□□□ -1.88
SDC3O75056 AL590240.3-201ENST00000621416 943 ntBASIC3.28□□□□□ -1.88
SDC3O75056 PLCE1P1-201ENST00000622094 305 ntBASIC3.28□□□□□ -1.88
SDC3O75056 GMFB-210ENST00000628554 639 ntTSL 4 BASIC3.28□□□□□ -1.88
SDC3O75056 OR4G3P-201ENST00000633500 913 ntBASIC3.28□□□□□ -1.88
SDC3O75056 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC3.28□□□□□ -1.88
SDC3O75056 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SDC3O75056 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.28□□□□□ -1.88
SDC3O75056 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SDC3O75056 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
SDC3O75056 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.89
SDC3O75056 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SDC3O75056 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SDC3O75056 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.27□□□□□ -1.89
SDC3O75056 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.27□□□□□ -1.89
SDC3O75056 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SDC3O75056 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
SDC3O75056 Y_RNA.25-201ENST00000362528 102 ntBASIC3.27□□□□□ -1.89
SDC3O75056 RNU6-216P-201ENST00000363282 104 ntBASIC3.27□□□□□ -1.89
SDC3O75056 RNU6-1074P-201ENST00000383995 104 ntBASIC3.27□□□□□ -1.89
SDC3O75056 MTCO2P8-201ENST00000412213 658 ntBASIC3.27□□□□□ -1.89
SDC3O75056 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.27□□□□□ -1.89
SDC3O75056 NANOGP2-201ENST00000435391 727 ntBASIC3.27□□□□□ -1.89
SDC3O75056 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.27□□□□□ -1.89
SDC3O75056 SLC31A1P1-201ENST00000451221 567 ntBASIC3.27□□□□□ -1.89
SDC3O75056 AC092754.2-201ENST00000463506 460 ntBASIC3.27□□□□□ -1.89
SDC3O75056 AP002884.2-201ENST00000471647 395 ntBASIC3.27□□□□□ -1.89
SDC3O75056 MLLT10P2-201ENST00000506434 249 ntBASIC3.27□□□□□ -1.89
SDC3O75056 AC114322.1-201ENST00000506771 926 ntBASIC3.27□□□□□ -1.89
SDC3O75056 AC006390.1-201ENST00000508068 283 ntBASIC3.27□□□□□ -1.89
SDC3O75056 RNU6-27P-201ENST00000516146 107 ntBASIC3.27□□□□□ -1.89
SDC3O75056 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.27□□□□□ -1.89
SDC3O75056 AC006518.1-201ENST00000541449 943 ntBASIC3.27□□□□□ -1.89
SDC3O75056 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SDC3O75056 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.27□□□□□ -1.89
SDC3O75056 AL845331.3-202ENST00000562856 261 ntBASIC3.27□□□□□ -1.89
SDC3O75056 MIR5004-201ENST00000579078 107 ntBASIC3.27□□□□□ -1.89
SDC3O75056 MIR4738-201ENST00000579134 87 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms