Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 COX6CP8-201ENST00000522620 226 ntBASIC4.41□□□□□ -1.7
DKK3Q9UBP4 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC4.41□□□□□ -1.7
DKK3Q9UBP4 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
DKK3Q9UBP4 AC008127.2-201ENST00000549925 1075 ntBASIC4.41□□□□□ -1.7
DKK3Q9UBP4 LSM6P2-201ENST00000552208 177 ntBASIC4.41□□□□□ -1.7
DKK3Q9UBP4 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
DKK3Q9UBP4 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC4.41□□□□□ -1.7
DKK3Q9UBP4 RPL23AP97-201ENST00000568955 471 ntBASIC4.41□□□□□ -1.7
DKK3Q9UBP4 AC091135.1-201ENST00000585943 307 ntBASIC4.41□□□□□ -1.7
DKK3Q9UBP4 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC4.41□□□□□ -1.7
DKK3Q9UBP4 TPMTP1-201ENST00000592307 737 ntBASIC4.41□□□□□ -1.7
DKK3Q9UBP4 AL359999.1-201ENST00000604513 294 ntBASIC4.41□□□□□ -1.7
DKK3Q9UBP4 AC010201.1-201ENST00000605051 540 ntBASIC4.41□□□□□ -1.7
DKK3Q9UBP4 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC4.41□□□□□ -1.7
DKK3Q9UBP4 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.41□□□□□ -1.7
DKK3Q9UBP4 UBE2Q2P2-203ENST00000613592 761 ntBASIC4.41□□□□□ -1.7
DKK3Q9UBP4 AC025253.1-201ENST00000613623 543 ntBASIC4.41□□□□□ -1.7
DKK3Q9UBP4 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
DKK3Q9UBP4 AC007546.2-201ENST00000623996 360 ntBASIC4.41□□□□□ -1.7
DKK3Q9UBP4 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.41□□□□□ -1.7
DKK3Q9UBP4 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
DKK3Q9UBP4 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.41□□□□□ -1.7
DKK3Q9UBP4 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
DKK3Q9UBP4 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
DKK3Q9UBP4 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.41□□□□□ -1.7
DKK3Q9UBP4 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.7
DKK3Q9UBP4 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.4□□□□□ -1.7
DKK3Q9UBP4 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
DKK3Q9UBP4 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.4□□□□□ -1.7
DKK3Q9UBP4 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
DKK3Q9UBP4 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
DKK3Q9UBP4 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.4□□□□□ -1.7
DKK3Q9UBP4 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.4□□□□□ -1.71
DKK3Q9UBP4 Y_RNA.9-201ENST00000362354 101 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 RNU1-20P-201ENST00000363314 162 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 RNU6-809P-201ENST00000384461 107 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 MIR153-1-201ENST00000384914 90 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 AL023807.1-201ENST00000407932 359 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 AC096632.1-201ENST00000427395 310 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.4□□□□□ -1.71
DKK3Q9UBP4 TRIM60P3Y-201ENST00000432201 673 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 AC023347.2-201ENST00000433994 462 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC4.4□□□□□ -1.71
DKK3Q9UBP4 RPL23AP74-201ENST00000437246 471 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 RSU1P2-202ENST00000437884 485 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 MTCO3P18-201ENST00000440206 761 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.71
DKK3Q9UBP4 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC4.4□□□□□ -1.71
DKK3Q9UBP4 RGS5-217ENST00000451759 835 ntTSL 3 BASIC4.4□□□□□ -1.71
DKK3Q9UBP4 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.4□□□□□ -1.71
DKK3Q9UBP4 Z82190.1-201ENST00000454534 490 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 TRBV26-201ENST00000456572 344 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 AC013267.1-201ENST00000458227 267 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 RPS26P28-201ENST00000470806 348 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.4□□□□□ -1.71
DKK3Q9UBP4 KCTD9P5-201ENST00000504141 1170 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.4□□□□□ -1.71
DKK3Q9UBP4 AC110792.2-201ENST00000510278 224 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 AC008549.1-201ENST00000512900 643 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 AC090151.1-201ENST00000520784 730 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC4.4□□□□□ -1.71
DKK3Q9UBP4 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
DKK3Q9UBP4 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.4□□□□□ -1.71
DKK3Q9UBP4 AL133457.1-201ENST00000564251 987 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 AC034105.4-201ENST00000568304 277 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 AC023575.1-201ENST00000580510 358 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 ACTR3BP1-201ENST00000605584 1247 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 HSPE1P14-201ENST00000605812 302 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 AC114781.5-201ENST00000615297 108 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 AL021997.2-201ENST00000615674 271 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 AC068722.2-201ENST00000618734 544 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 MIR7154-201ENST00000620673 73 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 PISRT1-201ENST00000626175 531 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 MIR3688-2-201ENST00000636963 87 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.4□□□□□ -1.71
DKK3Q9UBP4 AC066616.2-201ENST00000559334 1481 ntBASIC4.4□□□□□ -1.71
DKK3Q9UBP4 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.4□□□□□ -1.71
DKK3Q9UBP4 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
DKK3Q9UBP4 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.4□□□□□ -1.71
DKK3Q9UBP4 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
DKK3Q9UBP4 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.4□□□□□ -1.71
DKK3Q9UBP4 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
DKK3Q9UBP4 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
DKK3Q9UBP4 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
DKK3Q9UBP4 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
DKK3Q9UBP4 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC4.39□□□□□ -1.71
DKK3Q9UBP4 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
DKK3Q9UBP4 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.39□□□□□ -1.71
DKK3Q9UBP4 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.39□□□□□ -1.71
DKK3Q9UBP4 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
DKK3Q9UBP4 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
DKK3Q9UBP4 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
DKK3Q9UBP4 AP002001.2-201ENST00000529025 1469 ntBASIC4.39□□□□□ -1.71
DKK3Q9UBP4 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
DKK3Q9UBP4 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
DKK3Q9UBP4 RNU6-289P-201ENST00000364093 107 ntBASIC4.39□□□□□ -1.71
DKK3Q9UBP4 SNORD74.4-201ENST00000364129 80 ntBASIC4.39□□□□□ -1.71
DKK3Q9UBP4 Y_RNA.256-201ENST00000364594 104 ntBASIC4.39□□□□□ -1.71
DKK3Q9UBP4 RNU4-12P-201ENST00000365233 139 ntBASIC4.39□□□□□ -1.71
DKK3Q9UBP4 RNA5SP366-201ENST00000365454 123 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms