Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.25□□□□□ -1.89
VPS35Q96QK1 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
VPS35Q96QK1 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
VPS35Q96QK1 RNU6-1074P-201ENST00000383995 104 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 SNORD51-201ENST00000384320 80 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 RNU2-15P-201ENST00000410692 191 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 RNA5SP229-201ENST00000410809 99 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 RNA5SP120-201ENST00000410900 112 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
VPS35Q96QK1 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS35Q96QK1 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS35Q96QK1 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC3.25□□□□□ -1.89
VPS35Q96QK1 AC006483.1-201ENST00000487308 313 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 RN7SL283P-201ENST00000489055 303 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 AC006390.1-201ENST00000508068 283 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS35Q96QK1 RNA5SP385-201ENST00000515947 110 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.25□□□□□ -1.89
VPS35Q96QK1 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.25□□□□□ -1.89
VPS35Q96QK1 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS35Q96QK1 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
VPS35Q96QK1 AC118942.1-201ENST00000529674 1035 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC3.25□□□□□ -1.89
VPS35Q96QK1 HIGD1AP1-201ENST00000550979 275 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS35Q96QK1 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS35Q96QK1 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS35Q96QK1 AC008507.1-201ENST00000587506 734 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 AL022067.1-201ENST00000602426 454 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 SRGNP1-201ENST00000603392 451 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 RPL23AP92-201ENST00000603609 255 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 AC069545.1-201ENST00000605671 358 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 AC016877.3-201ENST00000606778 504 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 AC024060.1-201ENST00000607052 494 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 AC009237.15-201ENST00000610252 501 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 AC104985.3-201ENST00000623479 597 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.25□□□□□ -1.89
VPS35Q96QK1 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
VPS35Q96QK1 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS35Q96QK1 AC004972.1-201ENST00000623934 2209 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 AC093908.1-201ENST00000623125 8092 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.24□□□□□ -1.89
VPS35Q96QK1 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS35Q96QK1 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS35Q96QK1 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
VPS35Q96QK1 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
VPS35Q96QK1 RNU1-75P-201ENST00000347264 129 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 MIR148B-201ENST00000362252 99 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 RNU5D-1-201ENST00000363299 116 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 SNORD46.1-201ENST00000364139 104 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 GLRXP1-201ENST00000423261 334 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
VPS35Q96QK1 GTF2IP23-201ENST00000423746 351 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 DUTP6-201ENST00000425573 462 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.24□□□□□ -1.89
VPS35Q96QK1 GTF2IP3-201ENST00000433887 494 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 MTND4LP10-201ENST00000435146 291 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.24□□□□□ -1.89
VPS35Q96QK1 AL591503.2-201ENST00000442314 1005 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.24□□□□□ -1.89
VPS35Q96QK1 Z99127.3-201ENST00000448158 395 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 RN7SL807P-201ENST00000470923 297 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.24□□□□□ -1.89
VPS35Q96QK1 AC079203.1-201ENST00000487972 404 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.24□□□□□ -1.89
VPS35Q96QK1 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.24□□□□□ -1.89
VPS35Q96QK1 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.24□□□□□ -1.89
VPS35Q96QK1 AC087808.1-201ENST00000520501 361 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 AC018630.1-201ENST00000541376 925 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.24□□□□□ -1.89
VPS35Q96QK1 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.24□□□□□ -1.89
VPS35Q96QK1 RPL21P12-201ENST00000559810 515 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.24□□□□□ -1.89
VPS35Q96QK1 MIR3912-201ENST00000577566 105 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 MIR4506-201ENST00000584693 77 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.24□□□□□ -1.89
VPS35Q96QK1 BNIP3P24-201ENST00000593398 557 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.24□□□□□ -1.89
VPS35Q96QK1 AL031985.2-201ENST00000600955 480 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 AL451074.6-201ENST00000608512 729 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.24□□□□□ -1.89
VPS35Q96QK1 AL138960.2-201ENST00000625145 535 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 U6.101-201ENST00000637707 76 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 AC007256.1-201ENST00000392253 2765 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS35Q96QK1 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS35Q96QK1 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.24□□□□□ -1.89
VPS35Q96QK1 AC110774.1-201ENST00000623567 2018 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 MTND5P1-201ENST00000445440 1375 ntBASIC3.24□□□□□ -1.89
VPS35Q96QK1 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
VPS35Q96QK1 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
VPS35Q96QK1 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VPS35Q96QK1 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS35Q96QK1 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS35Q96QK1 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VPS35Q96QK1 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS35Q96QK1 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms