Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RNU6-1261P-201ENST00000517194 104 ntBASIC3.31□□□□□ -1.88
SDC3O75056 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.31□□□□□ -1.88
SDC3O75056 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.31□□□□□ -1.88
SDC3O75056 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.31□□□□□ -1.88
SDC3O75056 AC090502.2-201ENST00000549267 280 ntBASIC3.31□□□□□ -1.88
SDC3O75056 SNORD84-203ENST00000584275 78 ntBASIC3.31□□□□□ -1.88
SDC3O75056 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.31□□□□□ -1.88
SDC3O75056 CKS1BP3-201ENST00000600888 237 ntBASIC3.31□□□□□ -1.88
SDC3O75056 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.31□□□□□ -1.88
SDC3O75056 AC011458.1-201ENST00000604034 617 ntBASIC3.31□□□□□ -1.88
SDC3O75056 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.31□□□□□ -1.88
SDC3O75056 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.31□□□□□ -1.88
SDC3O75056 LINC02211-204ENST00000642024 1070 ntBASIC3.31□□□□□ -1.88
SDC3O75056 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SDC3O75056 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.31□□□□□ -1.88
SDC3O75056 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SDC3O75056 AF117829.1-206ENST00000621883 3802 ntBASIC3.31□□□□□ -1.88
SDC3O75056 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SDC3O75056 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SDC3O75056 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SDC3O75056 MTND4P34-201ENST00000572715 1371 ntBASIC3.3□□□□□ -1.88
SDC3O75056 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
SDC3O75056 RNA5SP295-201ENST00000362655 121 ntBASIC3.3□□□□□ -1.88
SDC3O75056 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.3□□□□□ -1.88
SDC3O75056 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SDC3O75056 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC3.3□□□□□ -1.88
SDC3O75056 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
SDC3O75056 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.3□□□□□ -1.88
SDC3O75056 AL391417.1-201ENST00000404100 426 ntBASIC3.3□□□□□ -1.88
SDC3O75056 RNU2-28P-201ENST00000410457 189 ntBASIC3.3□□□□□ -1.88
SDC3O75056 MTATP6P20-201ENST00000414147 562 ntBASIC3.3□□□□□ -1.88
SDC3O75056 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC3.3□□□□□ -1.88
SDC3O75056 EXOSC3P1-201ENST00000448649 500 ntBASIC3.3□□□□□ -1.88
SDC3O75056 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC3.3□□□□□ -1.88
SDC3O75056 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC3.3□□□□□ -1.88
SDC3O75056 RPL21P13-201ENST00000488305 481 ntBASIC3.3□□□□□ -1.88
SDC3O75056 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.3□□□□□ -1.88
SDC3O75056 UBE2V1P12-201ENST00000503954 474 ntBASIC3.3□□□□□ -1.88
SDC3O75056 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC3.3□□□□□ -1.88
SDC3O75056 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SDC3O75056 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC3.3□□□□□ -1.88
SDC3O75056 AC119751.5-201ENST00000514077 770 ntBASIC3.3□□□□□ -1.88
SDC3O75056 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.3□□□□□ -1.88
SDC3O75056 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SDC3O75056 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.3□□□□□ -1.88
SDC3O75056 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC3.3□□□□□ -1.88
SDC3O75056 AC008489.1-201ENST00000524271 483 ntBASIC3.3□□□□□ -1.88
SDC3O75056 OR5AP1P-201ENST00000529730 940 ntBASIC3.3□□□□□ -1.88
SDC3O75056 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.3□□□□□ -1.88
SDC3O75056 DUXAP6-201ENST00000553858 601 ntBASIC3.3□□□□□ -1.88
SDC3O75056 MTND3P13-201ENST00000574391 343 ntBASIC3.3□□□□□ -1.88
SDC3O75056 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.3□□□□□ -1.88
SDC3O75056 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.3□□□□□ -1.88
SDC3O75056 AL160237.3-201ENST00000604114 1013 ntBASIC3.3□□□□□ -1.88
SDC3O75056 AL137843.1-201ENST00000605078 385 ntBASIC3.3□□□□□ -1.88
SDC3O75056 AC011816.2-201ENST00000607089 556 ntBASIC3.3□□□□□ -1.88
SDC3O75056 AC099778.2-201ENST00000610904 211 ntBASIC3.3□□□□□ -1.88
SDC3O75056 AC005332.6-201ENST00000613178 446 ntBASIC3.3□□□□□ -1.88
SDC3O75056 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
SDC3O75056 AL158163.2-201ENST00000619110 700 ntBASIC3.3□□□□□ -1.88
SDC3O75056 AC093908.1-201ENST00000623125 8092 ntBASIC3.3□□□□□ -1.88
SDC3O75056 AC026422.1-201ENST00000623961 452 ntBASIC3.3□□□□□ -1.88
SDC3O75056 SCARNA15.3-201ENST00000626315 122 ntBASIC3.3□□□□□ -1.88
SDC3O75056 SCARNA4.1-201ENST00000628597 123 ntBASIC3.3□□□□□ -1.88
SDC3O75056 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SDC3O75056 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SDC3O75056 AC092326.2-201ENST00000624772 1561 ntBASIC3.29□□□□□ -1.88
SDC3O75056 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SDC3O75056 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
SDC3O75056 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
SDC3O75056 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SDC3O75056 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
SDC3O75056 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
SDC3O75056 GDI2P1-201ENST00000429312 1336 ntBASIC3.29□□□□□ -1.88
SDC3O75056 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.29□□□□□ -1.88
SDC3O75056 Y_RNA.472-201ENST00000384322 102 ntBASIC3.29□□□□□ -1.88
SDC3O75056 SNORD116-12-201ENST00000384468 92 ntBASIC3.29□□□□□ -1.88
SDC3O75056 AC016769.3-201ENST00000396562 315 ntBASIC3.29□□□□□ -1.88
SDC3O75056 AL136310.1-201ENST00000404926 654 ntBASIC3.29□□□□□ -1.88
SDC3O75056 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.29□□□□□ -1.88
SDC3O75056 HMGN1P24-201ENST00000412282 298 ntBASIC3.29□□□□□ -1.88
SDC3O75056 Z99755.1-201ENST00000414048 380 ntBASIC3.29□□□□□ -1.88
SDC3O75056 AL353678.1-201ENST00000422735 741 ntBASIC3.29□□□□□ -1.88
SDC3O75056 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.29□□□□□ -1.88
SDC3O75056 AC004854.1-201ENST00000440356 349 ntBASIC3.29□□□□□ -1.88
SDC3O75056 OR10R1P-201ENST00000441524 1141 ntBASIC3.29□□□□□ -1.88
SDC3O75056 AC006539.3-201ENST00000454258 129 ntBASIC3.29□□□□□ -1.88
SDC3O75056 RFC5P1-201ENST00000454419 874 ntBASIC3.29□□□□□ -1.88
SDC3O75056 AP001992.1-205ENST00000462248 379 ntBASIC3.29□□□□□ -1.88
SDC3O75056 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC3.29□□□□□ -1.88
SDC3O75056 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3.29□□□□□ -1.88
SDC3O75056 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC3.29□□□□□ -1.88
SDC3O75056 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.29□□□□□ -1.88
SDC3O75056 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.29□□□□□ -1.88
SDC3O75056 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.29□□□□□ -1.88
SDC3O75056 RNA5SP341-201ENST00000516261 117 ntBASIC3.29□□□□□ -1.88
SDC3O75056 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.29□□□□□ -1.88
SDC3O75056 OR10V3P-201ENST00000525712 725 ntBASIC3.29□□□□□ -1.88
SDC3O75056 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.29□□□□□ -1.88
SDC3O75056 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms