Protein–RNA interactions for Protein: Q6ZNE9

RUFY4, RUN and FYVE domain-containing protein 4, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUFY4Q6ZNE9 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 ZNF734P-201ENST00000419494 1534 ntBASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 SNORA73.1-201ENST00000363107 205 ntBASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 RNU5A-8P-201ENST00000364102 114 ntBASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 RNVU1-3-201ENST00000364313 161 ntBASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 Y_RNA.535-201ENST00000384612 99 ntBASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 AC092832.1-201ENST00000422934 400 ntBASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 AC007283.2-201ENST00000424739 197 ntBASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 AL353691.1-201ENST00000451332 387 ntBASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 RPS5P7-201ENST00000456664 608 ntBASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 RPS20P24-201ENST00000457473 361 ntBASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 RPS23P7-201ENST00000466210 444 ntBASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 AL139099.1-201ENST00000497398 403 ntBASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 TMEM248P1-201ENST00000510579 951 ntBASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 AC133555.2-201ENST00000550213 292 ntBASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 ARL2BPP2-201ENST00000550907 489 ntBASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 PARP1P2-201ENST00000556806 195 ntBASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 AC025588.3-201ENST00000604182 274 ntBASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 Z84480.1-201ENST00000605131 311 ntBASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 TUG1_1.1-201ENST00000610654 145 ntBASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 AL138713.1-201ENST00000624026 2130 ntBASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
RUFY4Q6ZNE9 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 Y_RNA.142-201ENST00000363491 102 ntBASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 Y_RNA.509-201ENST00000384506 99 ntBASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 AL354719.1-201ENST00000406535 843 ntBASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 HMGN1P24-201ENST00000412282 298 ntBASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 SDCBPP3-201ENST00000419629 891 ntBASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 RPL30P3-201ENST00000424262 333 ntBASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 BNIP3P2-201ENST00000441221 577 ntBASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 ATP6V0E1P2-201ENST00000441771 245 ntBASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 snoU13.1-201ENST00000459157 104 ntBASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 RPS27AP17-201ENST00000463344 455 ntBASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 PCBP2P3-201ENST00000509726 843 ntBASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 FTH1P21-201ENST00000512179 511 ntBASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 RNA5SP249-201ENST00000516127 99 ntBASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 RN7SKP92-201ENST00000517266 244 ntBASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 OR5BN1P-201ENST00000532955 829 ntBASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 TEX41-238ENST00000604253 709 ntTSL 5 BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 AC115621.1-201ENST00000604653 858 ntBASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 AC083809.1-201ENST00000615051 472 ntBASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 RNF123-214ENST00000629802 207 ntTSL 5 BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
RUFY4Q6ZNE9 API5-210ENST00000534600 1760 ntTSL 5 BASIC5.34□□□□□ -1.56
RUFY4Q6ZNE9 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.56
RUFY4Q6ZNE9 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.34□□□□□ -1.56
RUFY4Q6ZNE9 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.56
RUFY4Q6ZNE9 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC5.33□□□□□ -1.56
RUFY4Q6ZNE9 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
RUFY4Q6ZNE9 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
RUFY4Q6ZNE9 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
RUFY4Q6ZNE9 RNU6-845P-201ENST00000362578 103 ntBASIC5.33□□□□□ -1.56
RUFY4Q6ZNE9 RNA5-8SP7-201ENST00000363443 155 ntBASIC5.33□□□□□ -1.56
RUFY4Q6ZNE9 Y_RNA.166-201ENST00000363730 102 ntBASIC5.33□□□□□ -1.56
RUFY4Q6ZNE9 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC5.33□□□□□ -1.56
RUFY4Q6ZNE9 SNORA70F-201ENST00000384142 135 ntBASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 178.5 ms