Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 RNU6-1103P-201ENST00000384150 107 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 BX295541.1-201ENST00000417774 250 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 RPS27AP12-201ENST00000429552 465 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 MRPS10P2-201ENST00000431226 381 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 ELOCP18-201ENST00000434209 337 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 ARPC3P1-201ENST00000437218 533 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 AL049734.2-201ENST00000441066 616 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 Z95327.1-201ENST00000446082 482 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 NPM1P49-201ENST00000448027 714 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 MTND1P9-201ENST00000453775 944 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 RN7SL98P-201ENST00000462271 300 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 RPL35AP15-201ENST00000468042 339 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 RN7SL303P-201ENST00000469773 251 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 RN7SL810P-201ENST00000493031 276 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 STMN1P2-201ENST00000508435 439 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 RNU6-314P-201ENST00000516574 104 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 IGLV3-26-201ENST00000520756 302 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 AP003497.1-201ENST00000528472 562 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 OR8L1P-201ENST00000534005 955 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 AHI1-217ENST00000534469 680 ntTSL 3 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 MEG8-218ENST00000556720 456 ntTSL 3 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 HNRNPCP4-201ENST00000571636 900 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 AC121334.2-201ENST00000605387 271 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 AC114781.5-201ENST00000615297 108 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 AL158209.2-201ENST00000619266 216 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 AC079597.1-201ENST00000624306 508 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 AC091925.2-201ENST00000625059 256 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 AC026951.1-201ENST00000559530 2459 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 AC011460.1-201ENST00000636268 1834 ntBASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 OR5P1P-201ENST00000299512 925 ntBASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 RNU1-15P-201ENST00000353977 144 ntBASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 RNU6-761P-201ENST00000384148 107 ntBASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 AC097374.1-203ENST00000400783 485 ntBASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 MIR548F1-201ENST00000408667 84 ntBASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 AL160275.2-201ENST00000412010 394 ntBASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 AC011933.1-201ENST00000413334 321 ntBASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 MTND1P23-201ENST00000416931 372 ntBASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 AC112653.1-201ENST00000443851 386 ntBASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 RPL29P29-201ENST00000448725 423 ntBASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 AL359385.1-201ENST00000456509 365 ntBASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 SNORD121B-201ENST00000458838 81 ntBASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 AC116533.1-201ENST00000459748 321 ntBASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 AC146507.1-201ENST00000468335 354 ntBASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 NPM1P41-201ENST00000512920 831 ntBASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 AC010493.1-201ENST00000513479 292 ntBASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 AP003181.2-201ENST00000528941 181 ntBASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 AL352979.3-201ENST00000553515 247 ntBASIC4.23□□□□□ -1.73
PTCHD3Q3KNS1 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms