Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LIG1P18858 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
LIG1P18858 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC5.69□□□□□ -1.5
LIG1P18858 MTND5P33-201ENST00000571250 1450 ntBASIC5.69□□□□□ -1.5
LIG1P18858 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
LIG1P18858 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
LIG1P18858 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
LIG1P18858 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
LIG1P18858 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LIG1P18858 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC5.69□□□□□ -1.5
LIG1P18858 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC5.68□□□□□ -1.5
LIG1P18858 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
LIG1P18858 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
LIG1P18858 OR14L1P-202ENST00000641545 3009 ntBASIC5.68□□□□□ -1.5
LIG1P18858 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
LIG1P18858 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
LIG1P18858 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
LIG1P18858 RN7SKP113-201ENST00000363891 295 ntBASIC5.68□□□□□ -1.5
LIG1P18858 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC5.68□□□□□ -1.5
LIG1P18858 CD3D-202ENST00000392884 476 ntTSL 2 BASIC5.68□□□□□ -1.5
LIG1P18858 AL023807.1-201ENST00000407932 359 ntBASIC5.68□□□□□ -1.5
LIG1P18858 NDUFB4P5-201ENST00000415445 361 ntBASIC5.68□□□□□ -1.5
LIG1P18858 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
LIG1P18858 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC5.68□□□□□ -1.5
LIG1P18858 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC5.68□□□□□ -1.5
LIG1P18858 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC5.68□□□□□ -1.5
LIG1P18858 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
LIG1P18858 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
LIG1P18858 AC137499.1-201ENST00000427602 88 ntBASIC5.68□□□□□ -1.5
LIG1P18858 AL356276.2-201ENST00000435919 558 ntBASIC5.68□□□□□ -1.5
LIG1P18858 RPS29P9-201ENST00000440360 171 ntBASIC5.68□□□□□ -1.5
LIG1P18858 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
LIG1P18858 CEACAMP7-201ENST00000444105 496 ntBASIC5.68□□□□□ -1.5
LIG1P18858 AC073850.1-201ENST00000449243 255 ntBASIC5.68□□□□□ -1.5
LIG1P18858 Y_RNA.631-201ENST00000459607 101 ntBASIC5.68□□□□□ -1.5
LIG1P18858 AC007547.1-201ENST00000462177 490 ntBASIC5.68□□□□□ -1.5
LIG1P18858 RN7SL610P-201ENST00000463845 291 ntBASIC5.68□□□□□ -1.5
LIG1P18858 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC5.68□□□□□ -1.5
LIG1P18858 AC004453.1-201ENST00000487895 408 ntBASIC5.68□□□□□ -1.5
LIG1P18858 RNA5SP337-201ENST00000517007 109 ntBASIC5.68□□□□□ -1.5
LIG1P18858 RN7SKP147-201ENST00000517154 244 ntBASIC5.68□□□□□ -1.5
LIG1P18858 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC5.68□□□□□ -1.5
LIG1P18858 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC5.68□□□□□ -1.5
LIG1P18858 LSM6P2-201ENST00000552208 177 ntBASIC5.68□□□□□ -1.5
LIG1P18858 AC103710.3-201ENST00000608157 948 ntBASIC5.68□□□□□ -1.5
LIG1P18858 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.68□□□□□ -1.5
LIG1P18858 AC040896.1-201ENST00000613819 479 ntBASIC5.68□□□□□ -1.5
LIG1P18858 AC130324.3-201ENST00000614165 542 ntBASIC5.68□□□□□ -1.5
LIG1P18858 AL158196.1-201ENST00000616786 434 ntBASIC5.68□□□□□ -1.5
LIG1P18858 LINC00901.1-201ENST00000617252 152 ntBASIC5.68□□□□□ -1.5
LIG1P18858 CR392039.4-201ENST00000624968 501 ntBASIC5.68□□□□□ -1.5
LIG1P18858 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
LIG1P18858 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
LIG1P18858 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
LIG1P18858 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.68□□□□□ -1.5
LIG1P18858 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.68□□□□□ -1.5
LIG1P18858 LINC01109-201ENST00000603837 3081 ntBASIC5.68□□□□□ -1.5
LIG1P18858 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.67□□□□□ -1.5
LIG1P18858 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
LIG1P18858 AL672167.1-203ENST00000641299 2975 ntBASIC5.67□□□□□ -1.5
LIG1P18858 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
LIG1P18858 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
LIG1P18858 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
LIG1P18858 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
LIG1P18858 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
LIG1P18858 SNORA33.2-201ENST00000365413 134 ntBASIC5.67□□□□□ -1.5
LIG1P18858 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
LIG1P18858 SNORA70.10-201ENST00000384515 134 ntBASIC5.67□□□□□ -1.5
LIG1P18858 RN7SKP114-201ENST00000410327 279 ntBASIC5.67□□□□□ -1.5
LIG1P18858 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC5.67□□□□□ -1.5
LIG1P18858 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC5.67□□□□□ -1.5
LIG1P18858 YWHAZP8-201ENST00000436935 731 ntBASIC5.67□□□□□ -1.5
LIG1P18858 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.67□□□□□ -1.5
LIG1P18858 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC5.67□□□□□ -1.5
LIG1P18858 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC5.67□□□□□ -1.5
LIG1P18858 GMFBP1-201ENST00000467831 427 ntBASIC5.67□□□□□ -1.5
LIG1P18858 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.67□□□□□ -1.5
LIG1P18858 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.67□□□□□ -1.5
LIG1P18858 AC090096.1-201ENST00000489168 390 ntBASIC5.67□□□□□ -1.5
LIG1P18858 SCARNA24.1-201ENST00000516465 137 ntBASIC5.67□□□□□ -1.5
LIG1P18858 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.67□□□□□ -1.5
LIG1P18858 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC5.67□□□□□ -1.5
LIG1P18858 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC5.67□□□□□ -1.5
LIG1P18858 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC5.67□□□□□ -1.5
LIG1P18858 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC5.67□□□□□ -1.5
LIG1P18858 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
LIG1P18858 AC006116.10-201ENST00000591836 581 ntBASIC5.67□□□□□ -1.5
LIG1P18858 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC5.67□□□□□ -1.5
LIG1P18858 AC104687.2-201ENST00000604442 342 ntBASIC5.67□□□□□ -1.5
LIG1P18858 HSPE1P14-201ENST00000605812 302 ntBASIC5.67□□□□□ -1.5
LIG1P18858 AL022345.1-201ENST00000607292 135 ntBASIC5.67□□□□□ -1.5
LIG1P18858 AP001521.2-201ENST00000608772 546 ntBASIC5.67□□□□□ -1.5
LIG1P18858 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC5.67□□□□□ -1.5
LIG1P18858 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC5.67□□□□□ -1.5
LIG1P18858 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.67□□□□□ -1.5
LIG1P18858 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
LIG1P18858 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
LIG1P18858 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC5.67□□□□□ -1.5
LIG1P18858 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
LIG1P18858 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 135.7 ms