Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CBX4O00257 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.8□□□□□ -1.64
CBX4O00257 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.8□□□□□ -1.64
CBX4O00257 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CBX4O00257 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CBX4O00257 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
CBX4O00257 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
CBX4O00257 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
CBX4O00257 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CBX4O00257 SNORA72.1-201ENST00000363485 129 ntBASIC4.8□□□□□ -1.64
CBX4O00257 RN7SKP267-201ENST00000410381 285 ntBASIC4.8□□□□□ -1.64
CBX4O00257 RNU4-78P-201ENST00000410940 126 ntBASIC4.8□□□□□ -1.64
CBX4O00257 RNU6-516P-201ENST00000411381 104 ntBASIC4.8□□□□□ -1.64
CBX4O00257 MRPL50P2-201ENST00000416821 482 ntBASIC4.8□□□□□ -1.64
CBX4O00257 AC140479.3-201ENST00000418944 1126 ntBASIC4.8□□□□□ -1.64
CBX4O00257 AL359265.2-201ENST00000434367 631 ntBASIC4.8□□□□□ -1.64
CBX4O00257 RPL35AP22-201ENST00000436855 335 ntBASIC4.8□□□□□ -1.64
CBX4O00257 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CBX4O00257 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC4.8□□□□□ -1.64
CBX4O00257 RPL21P89-201ENST00000444021 467 ntBASIC4.8□□□□□ -1.64
CBX4O00257 MTND5P20-201ENST00000448677 143 ntBASIC4.8□□□□□ -1.64
CBX4O00257 NANOGP10-201ENST00000453325 895 ntBASIC4.8□□□□□ -1.64
CBX4O00257 AC234775.1-201ENST00000454247 670 ntBASIC4.8□□□□□ -1.64
CBX4O00257 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.8□□□□□ -1.64
CBX4O00257 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC4.8□□□□□ -1.64
CBX4O00257 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC4.8□□□□□ -1.64
CBX4O00257 RNU6-358P-201ENST00000516564 75 ntBASIC4.8□□□□□ -1.64
CBX4O00257 RNU6-1220P-201ENST00000517126 108 ntBASIC4.8□□□□□ -1.64
CBX4O00257 AC090572.1-201ENST00000519251 160 ntBASIC4.8□□□□□ -1.64
CBX4O00257 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.8□□□□□ -1.64
CBX4O00257 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.8□□□□□ -1.64
CBX4O00257 AL133271.1-201ENST00000538229 291 ntBASIC4.8□□□□□ -1.64
CBX4O00257 RPL21P12-201ENST00000559810 515 ntBASIC4.8□□□□□ -1.64
CBX4O00257 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.8□□□□□ -1.64
CBX4O00257 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.8□□□□□ -1.64
CBX4O00257 MIR4715-201ENST00000584117 79 ntBASIC4.8□□□□□ -1.64
CBX4O00257 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.8□□□□□ -1.64
CBX4O00257 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.8□□□□□ -1.64
CBX4O00257 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CBX4O00257 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.8□□□□□ -1.64
CBX4O00257 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.8□□□□□ -1.64
CBX4O00257 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CBX4O00257 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
CBX4O00257 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.8□□□□□ -1.64
CBX4O00257 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CBX4O00257 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.8□□□□□ -1.64
CBX4O00257 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.8□□□□□ -1.64
CBX4O00257 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CBX4O00257 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
CBX4O00257 AL731566.1-201ENST00000620490 1937 ntBASIC4.8□□□□□ -1.64
CBX4O00257 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CBX4O00257 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
CBX4O00257 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CBX4O00257 CASC19-280ENST00000642102 1351 ntBASIC4.79□□□□□ -1.64
CBX4O00257 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.79□□□□□ -1.64
CBX4O00257 RPS4XP8-201ENST00000402039 771 ntBASIC4.79□□□□□ -1.64
CBX4O00257 ARL4AP5-201ENST00000404372 599 ntBASIC4.79□□□□□ -1.64
CBX4O00257 RNA5SP296-201ENST00000410523 111 ntBASIC4.79□□□□□ -1.64
CBX4O00257 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.79□□□□□ -1.64
CBX4O00257 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC4.79□□□□□ -1.64
CBX4O00257 CKS1BP6-201ENST00000424932 240 ntBASIC4.79□□□□□ -1.64
CBX4O00257 RSL24D1P6-201ENST00000426934 401 ntBASIC4.79□□□□□ -1.64
CBX4O00257 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC4.79□□□□□ -1.64
CBX4O00257 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CBX4O00257 CALM1P1-201ENST00000442082 433 ntBASIC4.79□□□□□ -1.64
CBX4O00257 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.79□□□□□ -1.64
CBX4O00257 RAD23BP3-201ENST00000454157 1152 ntBASIC4.79□□□□□ -1.64
CBX4O00257 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.79□□□□□ -1.64
CBX4O00257 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CBX4O00257 AC020893.1-201ENST00000502452 580 ntBASIC4.79□□□□□ -1.64
CBX4O00257 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.79□□□□□ -1.64
CBX4O00257 Y_RNA.702-201ENST00000516843 96 ntBASIC4.79□□□□□ -1.64
CBX4O00257 AC103783.1-201ENST00000520506 373 ntBASIC4.79□□□□□ -1.64
CBX4O00257 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC4.79□□□□□ -1.64
CBX4O00257 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.79□□□□□ -1.64
CBX4O00257 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC4.79□□□□□ -1.64
CBX4O00257 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.79□□□□□ -1.64
CBX4O00257 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.79□□□□□ -1.64
CBX4O00257 HMGB1P6-201ENST00000569046 646 ntBASIC4.79□□□□□ -1.64
CBX4O00257 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC4.79□□□□□ -1.64
CBX4O00257 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.79□□□□□ -1.64
CBX4O00257 AC025449.1-201ENST00000603896 529 ntBASIC4.79□□□□□ -1.64
CBX4O00257 AL590392.1-201ENST00000604960 446 ntBASIC4.79□□□□□ -1.64
CBX4O00257 TUG1_1.1-201ENST00000610654 145 ntBASIC4.79□□□□□ -1.64
CBX4O00257 AC063943.3-201ENST00000615562 356 ntBASIC4.79□□□□□ -1.64
CBX4O00257 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC4.79□□□□□ -1.64
CBX4O00257 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.79□□□□□ -1.64
CBX4O00257 FER-210ENST00000628534 558 ntTSL 5 BASIC4.79□□□□□ -1.64
CBX4O00257 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.79□□□□□ -1.64
CBX4O00257 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
CBX4O00257 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CBX4O00257 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.79□□□□□ -1.64
CBX4O00257 AL359922.3-201ENST00000624779 1670 ntBASIC4.79□□□□□ -1.64
CBX4O00257 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.79□□□□□ -1.64
CBX4O00257 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CBX4O00257 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.79□□□□□ -1.64
CBX4O00257 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
CBX4O00257 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.78□□□□□ -1.64
CBX4O00257 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
CBX4O00257 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms