Protein–RNA interactions for Protein: Q9Y5H2

PCDHGA11, Protocadherin gamma-A11, humanhuman

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11Q9Y5H2 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
PCDHGA11Q9Y5H2 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.72□□□□□ -1.49
PCDHGA11Q9Y5H2 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
PCDHGA11Q9Y5H2 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.49
PCDHGA11Q9Y5H2 PARP4P2-201ENST00000446672 3326 ntBASIC5.71□□□□□ -1.49
PCDHGA11Q9Y5H2 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
PCDHGA11Q9Y5H2 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
PCDHGA11Q9Y5H2 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 PKIB-203ENST00000368446 556 ntTSL 2 BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 GCNT1P4-201ENST00000404096 329 ntBASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 RN7SKP126-201ENST00000411143 300 ntBASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 AC011933.1-201ENST00000413334 321 ntBASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 RPL24P2-201ENST00000421023 475 ntBASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 AC009963.3-201ENST00000458090 486 ntBASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 AC091180.1-201ENST00000462104 372 ntBASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 RN7SL189P-201ENST00000468631 289 ntBASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 AC018797.1-201ENST00000510791 255 ntBASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 IGHVII-60-1-201ENST00000519079 256 ntBASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 MIR3154-201ENST00000577829 84 ntBASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 MIR4502-201ENST00000580432 81 ntBASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 AC124916.2-201ENST00000604416 224 ntBASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 AC007619.2-201ENST00000605743 379 ntBASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 AC138627.2-201ENST00000624202 601 ntBASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 U6.104-201ENST00000637979 90 ntBASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 AC004076.2-201ENST00000620532 3323 ntBASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 AC093849.1-201ENST00000563631 2209 ntBASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 AL672167.1-205ENST00000641112 3080 ntBASIC5.71□□□□□ -1.5
PCDHGA11Q9Y5H2 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 RNU6-1059P-201ENST00000363752 98 ntBASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 RNU6-842P-201ENST00000384269 107 ntBASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 RNU6-1026P-201ENST00000384465 108 ntBASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 RNU6-817P-201ENST00000391083 104 ntBASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 RPL35AP3-201ENST00000414680 288 ntBASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 AC092809.3-201ENST00000415453 231 ntBASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 RPS4XP5-201ENST00000419038 768 ntBASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 BX276092.6-201ENST00000430476 250 ntBASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 RPS15AP10-201ENST00000432472 382 ntBASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 PCMTD1P1-201ENST00000455560 355 ntBASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 BX276092.8-201ENST00000455722 250 ntBASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 RNU1-88P-201ENST00000459274 128 ntBASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 OTX2-203ENST00000554559 715 ntTSL 5 BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 AC127381.1-201ENST00000555979 939 ntBASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 AC109446.1-201ENST00000566172 220 ntBASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 OR1E3-201ENST00000575608 948 ntBASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 AC002044.1-201ENST00000606707 158 ntBASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 AC078938.1-201ENST00000620993 318 ntBASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 AP001052.1-201ENST00000626421 99 ntBASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHGA11Q9Y5H2 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PCDHGA11Q9Y5H2 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
PCDHGA11Q9Y5H2 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms