Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 AL136981.2-201ENST00000617319 734 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 MIR6130-201ENST00000619419 109 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 AC091046.2-201ENST00000620775 665 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 SPRR2C-201ENST00000290702 219 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 RNU5A-1-201ENST00000362698 116 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 RNU1-18P-201ENST00000363062 164 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 RNA5SP399-201ENST00000364003 117 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 RNU6-1078P-201ENST00000364522 103 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 RNU6-744P-201ENST00000365557 107 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 RNU6-157P-201ENST00000383957 107 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 RNU6-1316P-201ENST00000384242 108 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 MIR320C1-201ENST00000408566 88 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 MIR1290-201ENST00000408735 78 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 RNU6-628P-201ENST00000410675 107 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 AC233728.2-201ENST00000425348 757 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 AL691449.1-201ENST00000426570 421 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 ARF4P2-201ENST00000430209 526 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 HIGD1AP11-201ENST00000438361 280 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 RPS17P13-201ENST00000448974 407 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 AC098824.1-201ENST00000453565 980 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 ANKRD26P4-201ENST00000455755 950 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 SNORD121B-201ENST00000458838 81 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 AL049714.1-201ENST00000466686 347 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 AC021382.1-201ENST00000483523 359 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 HMGB1P36-201ENST00000487709 576 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 AP001025.2-201ENST00000490908 477 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 RNU5A-4P-201ENST00000516588 111 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 RNU6-711P-201ENST00000517255 106 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 AC008489.1-201ENST00000524271 483 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 AC125611.2-201ENST00000551907 647 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 DUXAP1-201ENST00000556632 463 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 MIR3921-201ENST00000577308 85 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 AC105224.1-201ENST00000587055 421 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 MIR6867-201ENST00000610636 67 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 MIR6868-201ENST00000611215 58 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 ZYXP1-201ENST00000617638 118 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 AC009039.2-201ENST00000624524 529 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 AC021755.1-201ENST00000559747 1447 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 AC118273.1-201ENST00000525324 3006 ntBASIC3.16□□□□□ -1.9
FOXA2Q9Y261 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.16□□□□□ -1.9
FOXA2Q9Y261 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
FOXA2Q9Y261 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
FOXA2Q9Y261 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
FOXA2Q9Y261 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
FOXA2Q9Y261 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.15□□□□□ -1.9
FOXA2Q9Y261 AC092447.10-201ENST00000620607 1652 ntBASIC3.15□□□□□ -1.9
FOXA2Q9Y261 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 RNU6-462P-201ENST00000362659 105 ntBASIC3.15□□□□□ -1.91
FOXA2Q9Y261 RNU1-13P-201ENST00000384499 162 ntBASIC3.15□□□□□ -1.91
FOXA2Q9Y261 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 RPS4XP3-201ENST00000398541 413 ntBASIC3.15□□□□□ -1.91
FOXA2Q9Y261 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 AL008987.1-201ENST00000415528 237 ntBASIC3.15□□□□□ -1.91
FOXA2Q9Y261 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 MTCO2P21-201ENST00000419780 677 ntBASIC3.15□□□□□ -1.91
FOXA2Q9Y261 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 AC091390.1-201ENST00000433904 331 ntBASIC3.15□□□□□ -1.91
FOXA2Q9Y261 RPL26P6-201ENST00000440913 438 ntBASIC3.15□□□□□ -1.91
FOXA2Q9Y261 RSL24D1P3-201ENST00000449255 495 ntBASIC3.15□□□□□ -1.91
FOXA2Q9Y261 MTCO3P20-201ENST00000454926 688 ntBASIC3.15□□□□□ -1.91
FOXA2Q9Y261 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 RPL31P60-201ENST00000478450 367 ntBASIC3.15□□□□□ -1.91
FOXA2Q9Y261 RPL30P14-201ENST00000482744 348 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms