Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 MIR5096-201ENST00000583713 70 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AC009977.1-201ENST00000586015 570 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 OR4G1P-201ENST00000588632 938 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AC067852.4-201ENST00000590314 478 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AL022154.1-201ENST00000604698 785 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AC090578.1-201ENST00000604955 591 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AC091834.1-201ENST00000614543 472 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AC026368.1-201ENST00000614934 690 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AC114781.5-201ENST00000615297 108 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AC072046.2-201ENST00000618366 268 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AC095031.1-201ENST00000623685 672 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AC011944.2-201ENST00000624440 683 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 MIR3653-201ENST00000625572 110 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 AL592437.2-201ENST00000421655 2434 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 LARP1BP1-201ENST00000506036 1359 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 ZNF734P-201ENST00000419494 1534 ntBASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIMCH1Q9UPQ0 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 THUMPD3P1-201ENST00000506556 1480 ntBASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 AC022893.2-201ENST00000564832 3296 ntBASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 SNORA60-201ENST00000362396 134 ntBASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 RNU6-343P-201ENST00000364709 104 ntBASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 RPL23AP26-201ENST00000412728 464 ntBASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 PSMA6P3-201ENST00000428242 164 ntBASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 AC068287.1-201ENST00000430283 295 ntBASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 AC087650.1-201ENST00000431445 468 ntBASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 MTND3P21-201ENST00000433774 331 ntBASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 PGBD4P3-201ENST00000440731 581 ntBASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 AL022238.1-201ENST00000442557 355 ntBASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 MTND1P1-201ENST00000445453 368 ntBASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 AL162388.1-201ENST00000450912 352 ntBASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 AC099563.1-201ENST00000456086 418 ntBASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 AP001992.1-205ENST00000462248 379 ntBASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 PTP4A1P6-201ENST00000531034 478 ntBASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 AC025588.3-201ENST00000604182 274 ntBASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 AC013476.2-201ENST00000614456 459 ntBASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 AL158196.1-201ENST00000616786 434 ntBASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 AL596245.1-201ENST00000618994 362 ntBASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 BDP1P-201ENST00000582658 1990 ntBASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
LIMCH1Q9UPQ0 AC010300.1-201ENST00000600671 5134 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 LINC02471-203ENST00000641941 4752 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 MIR383-201ENST00000362257 73 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 MIR708-201ENST00000390708 88 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 MTND4LP20-201ENST00000402379 270 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 MIR1250-201ENST00000408098 113 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 MIR1251-201ENST00000408552 70 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AL592293.2-201ENST00000422292 996 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AL391219.1-201ENST00000422570 483 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AC104651.1-201ENST00000427559 735 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 ATP5HP2-201ENST00000433885 485 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 KCTD9P3-201ENST00000434597 1169 ntBASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms