Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 AC004853.1-201ENST00000604902 698 ntBASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 AC023043.4-201ENST00000612081 449 ntBASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 RMST_7.1-201ENST00000621935 268 ntBASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 AC008785.1-201ENST00000624475 456 ntBASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 MIR1302-1-201ENST00000637932 143 ntBASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 RALGAPA1P1-201ENST00000443361 6232 ntBASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 ALB-202ENST00000401494 1659 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 AL645937.1-201ENST00000641739 1652 ntBASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 RAD17P1-201ENST00000418130 2042 ntBASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 RNA5SP28-201ENST00000363841 119 ntBASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 AL591416.1-201ENST00000404015 867 ntBASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 TXNP7-201ENST00000406296 293 ntBASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 MTND3P8-201ENST00000412909 339 ntBASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 AL121877.1-201ENST00000453704 622 ntBASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 AC079168.2-201ENST00000453977 416 ntBASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 CYCSP34-201ENST00000458172 304 ntBASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 GMFBP1-201ENST00000467831 427 ntBASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 EIF4EP3-201ENST00000498782 656 ntBASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 HSPD1P15-201ENST00000505573 1122 ntBASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 AC026427.2-201ENST00000506228 536 ntBASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 AC021146.1-201ENST00000511202 716 ntBASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 RNU4ATAC10P-201ENST00000516967 122 ntBASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 RNU6-709P-201ENST00000517257 104 ntBASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 PYM1-205ENST00000547925 499 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 AL121821.2-201ENST00000556081 394 ntBASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 PRPF19P1-201ENST00000584766 898 ntBASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 YWHAQP7-201ENST00000603536 658 ntBASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC87Q9NVE4 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 AC125336.1-201ENST00000508893 2827 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 Y_RNA.326-201ENST00000365176 113 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 RNU6ATAC5P-201ENST00000388104 126 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 RN7SKP16-201ENST00000410180 299 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 AC004987.3-201ENST00000413879 771 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 AC099336.2-201ENST00000422457 254 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 AC092832.1-201ENST00000422934 400 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 IFNA20P-201ENST00000436840 528 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 AL359073.1-201ENST00000448036 403 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 AC233279.1-201ENST00000455300 423 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 AC108059.3-201ENST00000456388 214 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 AC099560.2-201ENST00000457554 255 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 RNU6ATAC28P-201ENST00000459249 118 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 MTND5P5-201ENST00000503764 376 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 AC103851.1-201ENST00000506833 274 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 AC114797.1-201ENST00000514003 728 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 SNORD27.1-201ENST00000516319 72 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 SUB1P1-201ENST00000524415 382 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 NACA-211ENST00000548563 827 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 MIR3138-201ENST00000585238 82 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 AC113139.1-201ENST00000605049 239 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms