Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC010683.1-201ENST00000473673 378 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 AC092045.1-201ENST00000495716 1231 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 AC108078.3-201ENST00000502633 489 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC3.63□□□□□ -1.83
SIX2Q9NPC8 OR5B10P-201ENST00000532869 642 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 AC007458.1-201ENST00000542812 373 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.63□□□□□ -1.83
SIX2Q9NPC8 OR7K1P-201ENST00000546439 926 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.63□□□□□ -1.83
SIX2Q9NPC8 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.63□□□□□ -1.83
SIX2Q9NPC8 AC007954.1-201ENST00000554198 494 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 NDUFAF4P1-201ENST00000559425 519 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.63□□□□□ -1.83
SIX2Q9NPC8 MTCYBP33-201ENST00000575007 1130 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 AC011260.1-201ENST00000578420 472 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 MIR4716-201ENST00000579628 84 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.63□□□□□ -1.83
SIX2Q9NPC8 AC110741.2-201ENST00000605278 268 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 AC135507.1-201ENST00000607214 561 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 MIR7851-201ENST00000610611 160 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 MIR6864-201ENST00000617935 70 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 AL031667.3-201ENST00000620124 655 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 AC092184.1-201ENST00000625042 715 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 PCMTD1P7-201ENST00000634506 357 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 AC244258.1-201ENST00000637553 1071 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 AL392088.2-201ENST00000637607 285 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.63□□□□□ -1.83
SIX2Q9NPC8 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.63□□□□□ -1.83
SIX2Q9NPC8 CR383658.2-201ENST00000547576 1525 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 OR5BR1P-201ENST00000524992 1330 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
SIX2Q9NPC8 MTND5P24-201ENST00000438892 1767 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 AC017071.1-201ENST00000564407 2204 ntBASIC3.63□□□□□ -1.83
SIX2Q9NPC8 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
SIX2Q9NPC8 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
SIX2Q9NPC8 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
SIX2Q9NPC8 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 AC007529.1-201ENST00000418574 2178 ntBASIC3.62□□□□□ -1.83
SIX2Q9NPC8 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 RNU1-75P-201ENST00000347264 129 ntBASIC3.62□□□□□ -1.83
SIX2Q9NPC8 RNU6-984P-201ENST00000363236 109 ntBASIC3.62□□□□□ -1.83
SIX2Q9NPC8 Y_RNA.318-201ENST00000365131 97 ntBASIC3.62□□□□□ -1.83
SIX2Q9NPC8 RNU6-920P-201ENST00000410926 92 ntBASIC3.62□□□□□ -1.83
SIX2Q9NPC8 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 AL590609.2-201ENST00000421430 368 ntBASIC3.62□□□□□ -1.83
SIX2Q9NPC8 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 AC093698.1-201ENST00000423843 571 ntBASIC3.62□□□□□ -1.83
SIX2Q9NPC8 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 AC105402.2-201ENST00000438503 358 ntBASIC3.62□□□□□ -1.83
SIX2Q9NPC8 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 AL359073.1-201ENST00000448036 403 ntBASIC3.62□□□□□ -1.83
SIX2Q9NPC8 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 RPL26P28-201ENST00000451325 435 ntBASIC3.62□□□□□ -1.83
SIX2Q9NPC8 RPL23AP35-201ENST00000451906 501 ntBASIC3.62□□□□□ -1.83
SIX2Q9NPC8 TRGVB-201ENST00000453257 471 ntBASIC3.62□□□□□ -1.83
SIX2Q9NPC8 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 RPL23AP67-201ENST00000465341 474 ntBASIC3.62□□□□□ -1.83
SIX2Q9NPC8 SETP11-201ENST00000473027 690 ntBASIC3.62□□□□□ -1.83
SIX2Q9NPC8 MTCYBP17-201ENST00000503579 789 ntBASIC3.62□□□□□ -1.83
SIX2Q9NPC8 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 RNU6-583P-201ENST00000516012 92 ntBASIC3.62□□□□□ -1.83
SIX2Q9NPC8 SCARNA20.6-201ENST00000517251 106 ntBASIC3.62□□□□□ -1.83
SIX2Q9NPC8 PAICSP4-201ENST00000517543 1253 ntBASIC3.62□□□□□ -1.83
SIX2Q9NPC8 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 HNRNPCP4-201ENST00000571636 900 ntBASIC3.62□□□□□ -1.83
SIX2Q9NPC8 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 AC024560.3-201ENST00000608482 349 ntBASIC3.62□□□□□ -1.83
SIX2Q9NPC8 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 ZNF37BP-203ENST00000452306 1352 ntBASIC3.62□□□□□ -1.83
SIX2Q9NPC8 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
SIX2Q9NPC8 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.61□□□□□ -1.83
SIX2Q9NPC8 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.61□□□□□ -1.83
SIX2Q9NPC8 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.61□□□□□ -1.83
SIX2Q9NPC8 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
SIX2Q9NPC8 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms