Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CBX3P5-201ENST00000552017 521 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 TVP23CP2-201ENST00000571473 623 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 MIR4270-201ENST00000581799 70 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 AC010928.3-201ENST00000587712 541 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 AC112191.3-201ENST00000604371 277 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 AC007363.1-201ENST00000604736 620 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 HMGN2P28-201ENST00000606102 262 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 AC002550.2-201ENST00000621246 394 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 AC138915.3-201ENST00000562908 1389 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 SAMMSON-226ENST00000642089 1582 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 AC244517.1-201ENST00000606030 2086 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 RNU6-1249P-201ENST00000363237 111 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 Y_RNA.142-201ENST00000363491 102 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 Y_RNA.394-201ENST00000383942 103 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 Y_RNA.409-201ENST00000383990 98 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 RNU6-533P-201ENST00000384144 107 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 RNU6-1103P-201ENST00000384150 107 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 Y_RNA.460-201ENST00000384255 102 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 AL590004.1-201ENST00000405321 300 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 AC092447.6-201ENST00000414578 210 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 AC009961.2-201ENST00000435771 251 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 MTCYBP6-201ENST00000441810 138 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 OR1H1P-201ENST00000448731 937 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 SLC25A18P1-201ENST00000449385 454 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 AC006967.1-201ENST00000467608 589 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 AC021382.1-201ENST00000483523 359 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 RPL39P36-201ENST00000490784 156 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 MRPS33P2-201ENST00000507850 322 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 KCTD9P2-201ENST00000512203 1013 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 OR7H2P-201ENST00000513483 306 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 Y_RNA.693-201ENST00000516641 110 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 RNU6-1003P-201ENST00000517099 105 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 AC012339.2-201ENST00000523996 453 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 HPRT1P3-201ENST00000539521 576 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 RN7SL722P-201ENST00000617780 284 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 RN7SL565P-201ENST00000618246 284 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 YWHAEP7-203ENST00000622054 312 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 AC090574.1-201ENST00000623186 233 ntBASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP3Q96DZ5 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.71□□□□□ -1.65
CLIP3Q96DZ5 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.71□□□□□ -1.65
CLIP3Q96DZ5 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.65
CLIP3Q96DZ5 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AC012618.3-205ENST00000637896 1496 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 RNU4-79P-201ENST00000362764 141 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 RNU6-877P-201ENST00000383868 107 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 RNA5SP87-201ENST00000384155 118 ntBASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 146.2 ms