Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 BNIP3P23-201ENST00000599655 511 ntBASIC3.31□□□□□ -1.88
CDX1P47902 AL161729.3-201ENST00000603533 673 ntBASIC3.31□□□□□ -1.88
CDX1P47902 AP000811.1-201ENST00000603803 651 ntBASIC3.31□□□□□ -1.88
CDX1P47902 AC106791.2-201ENST00000604680 391 ntBASIC3.31□□□□□ -1.88
CDX1P47902 AC012443.1-201ENST00000605605 231 ntBASIC3.31□□□□□ -1.88
CDX1P47902 AC097468.3-201ENST00000607956 456 ntBASIC3.31□□□□□ -1.88
CDX1P47902 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.31□□□□□ -1.88
CDX1P47902 AC012531.5-201ENST00000611375 151 ntBASIC3.31□□□□□ -1.88
CDX1P47902 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC3.31□□□□□ -1.88
CDX1P47902 AC091304.6-201ENST00000619761 202 ntBASIC3.31□□□□□ -1.88
CDX1P47902 AL031667.3-201ENST00000620124 655 ntBASIC3.31□□□□□ -1.88
CDX1P47902 AC131159.1-201ENST00000621854 213 ntBASIC3.31□□□□□ -1.88
CDX1P47902 AF117829.1-206ENST00000621883 3802 ntBASIC3.31□□□□□ -1.88
CDX1P47902 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC3.31□□□□□ -1.88
CDX1P47902 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.31□□□□□ -1.88
CDX1P47902 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CDX1P47902 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CDX1P47902 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.3□□□□□ -1.88
CDX1P47902 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CDX1P47902 AC092447.10-201ENST00000620607 1652 ntBASIC3.3□□□□□ -1.88
CDX1P47902 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CDX1P47902 TAB3P1-202ENST00000452645 1634 ntBASIC3.3□□□□□ -1.88
CDX1P47902 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC3.3□□□□□ -1.88
CDX1P47902 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
CDX1P47902 OTUD4P1-201ENST00000237841 3067 ntBASIC3.3□□□□□ -1.88
CDX1P47902 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
CDX1P47902 SYF2-202ENST00000354361 926 ntTSL 2 BASIC3.3□□□□□ -1.88
CDX1P47902 AL672167.1-206ENST00000356293 943 ntBASIC3.3□□□□□ -1.88
CDX1P47902 RNU6-853P-201ENST00000364306 107 ntBASIC3.3□□□□□ -1.88
CDX1P47902 RNU6-359P-201ENST00000365466 108 ntBASIC3.3□□□□□ -1.88
CDX1P47902 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
CDX1P47902 RN7SKP285-201ENST00000410137 318 ntBASIC3.3□□□□□ -1.88
CDX1P47902 RNA5SP36-201ENST00000410197 133 ntBASIC3.3□□□□□ -1.88
CDX1P47902 MIR1911-201ENST00000410783 80 ntBASIC3.3□□□□□ -1.88
CDX1P47902 HMGB1P11-201ENST00000413899 637 ntBASIC3.3□□□□□ -1.88
CDX1P47902 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC3.3□□□□□ -1.88
CDX1P47902 AC108032.1-201ENST00000416706 207 ntBASIC3.3□□□□□ -1.88
CDX1P47902 AC011233.1-201ENST00000422812 283 ntBASIC3.3□□□□□ -1.88
CDX1P47902 AC234781.2-201ENST00000426370 994 ntBASIC3.3□□□□□ -1.88
CDX1P47902 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.3□□□□□ -1.88
CDX1P47902 AC004975.1-201ENST00000428733 208 ntBASIC3.3□□□□□ -1.88
CDX1P47902 MTND5P25-201ENST00000430499 799 ntBASIC3.3□□□□□ -1.88
CDX1P47902 AL590103.1-201ENST00000434488 307 ntBASIC3.3□□□□□ -1.88
CDX1P47902 UBE2V1P13-201ENST00000436983 439 ntBASIC3.3□□□□□ -1.88
CDX1P47902 THAP5P1-201ENST00000439089 262 ntBASIC3.3□□□□□ -1.88
CDX1P47902 MTND5P2-201ENST00000442927 1142 ntBASIC3.3□□□□□ -1.88
CDX1P47902 AC112653.1-201ENST00000443851 386 ntBASIC3.3□□□□□ -1.88
CDX1P47902 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.3□□□□□ -1.88
CDX1P47902 AC010655.1-201ENST00000449336 292 ntBASIC3.3□□□□□ -1.88
CDX1P47902 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC3.3□□□□□ -1.88
CDX1P47902 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.3□□□□□ -1.88
CDX1P47902 SNORD121B-201ENST00000458838 81 ntBASIC3.3□□□□□ -1.88
CDX1P47902 RPS7P7-201ENST00000463499 571 ntBASIC3.3□□□□□ -1.88
CDX1P47902 AC021382.1-201ENST00000483523 359 ntBASIC3.3□□□□□ -1.88
CDX1P47902 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC3.3□□□□□ -1.88
CDX1P47902 RPL7P23-201ENST00000493874 747 ntBASIC3.3□□□□□ -1.88
CDX1P47902 AC106872.3-201ENST00000495104 446 ntBASIC3.3□□□□□ -1.88
CDX1P47902 RPS27AP13-201ENST00000498403 237 ntBASIC3.3□□□□□ -1.88
CDX1P47902 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.3□□□□□ -1.88
CDX1P47902 AC098862.1-201ENST00000504991 413 ntBASIC3.3□□□□□ -1.88
CDX1P47902 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.3□□□□□ -1.88
CDX1P47902 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.3□□□□□ -1.88
CDX1P47902 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.3□□□□□ -1.88
CDX1P47902 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC3.3□□□□□ -1.88
CDX1P47902 RNU1-61P-201ENST00000516107 151 ntBASIC3.3□□□□□ -1.88
CDX1P47902 RNA5SP519-201ENST00000516480 119 ntBASIC3.3□□□□□ -1.88
CDX1P47902 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.3□□□□□ -1.88
CDX1P47902 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC3.3□□□□□ -1.88
CDX1P47902 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC3.3□□□□□ -1.88
CDX1P47902 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.3□□□□□ -1.88
CDX1P47902 MED28P6-201ENST00000558776 231 ntBASIC3.3□□□□□ -1.88
CDX1P47902 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.3□□□□□ -1.88
CDX1P47902 AC002400.1-201ENST00000569310 726 ntBASIC3.3□□□□□ -1.88
CDX1P47902 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC3.3□□□□□ -1.88
CDX1P47902 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.3□□□□□ -1.88
CDX1P47902 AC021171.1-201ENST00000603137 706 ntBASIC3.3□□□□□ -1.88
CDX1P47902 AC013444.2-201ENST00000603317 787 ntBASIC3.3□□□□□ -1.88
CDX1P47902 AL158211.4-201ENST00000606988 584 ntBASIC3.3□□□□□ -1.88
CDX1P47902 RNVU1-4-201ENST00000612985 164 ntBASIC3.3□□□□□ -1.88
CDX1P47902 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CDX1P47902 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CDX1P47902 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
CDX1P47902 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.3□□□□□ -1.88
CDX1P47902 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CDX1P47902 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
CDX1P47902 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
CDX1P47902 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
CDX1P47902 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.29□□□□□ -1.88
CDX1P47902 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CDX1P47902 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC3.29□□□□□ -1.88
CDX1P47902 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC3.29□□□□□ -1.88
CDX1P47902 AL121657.1-201ENST00000327215 531 ntBASIC3.29□□□□□ -1.88
CDX1P47902 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CDX1P47902 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
CDX1P47902 RNU6-433P-201ENST00000363216 104 ntBASIC3.29□□□□□ -1.88
CDX1P47902 Y_RNA.302-201ENST00000364997 102 ntBASIC3.29□□□□□ -1.88
CDX1P47902 Y_RNA.548-201ENST00000384656 105 ntBASIC3.29□□□□□ -1.88
CDX1P47902 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.29□□□□□ -1.88
CDX1P47902 AL022722.2-201ENST00000402519 180 ntBASIC3.29□□□□□ -1.88
CDX1P47902 AL590704.1-201ENST00000402856 794 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms