Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC012557.2-201ENST00000605919 418 ntBASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 AL360181.4-201ENST00000621752 134 ntBASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 AL359715.5-201ENST00000623431 443 ntBASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC9Q9Y3X0 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 SNORA31-201ENST00000362607 130 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 RNU6-278P-201ENST00000390945 109 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 RPS3AP24-201ENST00000407896 734 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 HMGB3P23-201ENST00000414981 585 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 FARSBP1-201ENST00000435808 1778 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 AC004866.2-201ENST00000438285 481 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 DDX10P1-201ENST00000448545 1933 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 RPL31P13-201ENST00000484151 370 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 AC016559.2-201ENST00000510759 359 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 RNU6-405P-201ENST00000516637 110 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 HMGB1P19-201ENST00000517578 577 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 AP003181.2-201ENST00000528941 181 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 AC105233.3-201ENST00000531125 744 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 AL121834.1-201ENST00000572284 509 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 MIR3146-201ENST00000580367 79 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 AC090578.1-201ENST00000604955 591 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 AL034351.1-201ENST00000605288 668 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 AC108747.1-201ENST00000609508 535 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 AL589743.7-201ENST00000612637 233 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 AL450472.3-201ENST00000615578 367 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 MIR6875-201ENST00000617506 72 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 AC019226.1-201ENST00000625666 515 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 AL392088.2-201ENST00000637607 285 ntBASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC9Q9Y3X0 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 AC006971.1-201ENST00000407916 4486 ntBASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 MIR200C-201ENST00000384980 68 ntBASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 RNU6-754P-201ENST00000391166 107 ntBASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 RN7SKP159-201ENST00000410657 292 ntBASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 SNRPFP1-201ENST00000414761 252 ntBASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 DUTP6-201ENST00000425573 462 ntBASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 RABEPKP1-201ENST00000440529 1026 ntBASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 SNRPGP5-201ENST00000456003 220 ntBASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 AC135721.1-201ENST00000497954 479 ntBASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 RPL23AP55-201ENST00000498163 452 ntBASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 AC146944.2-203ENST00000502493 354 ntBASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 VN1R104P-201ENST00000505115 1009 ntBASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 AC139495.1-202ENST00000513164 354 ntBASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 AP003392.2-201ENST00000527269 208 ntBASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 AP000827.1-201ENST00000527814 258 ntBASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 AC125611.2-201ENST00000551907 647 ntBASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 MTND1P15-201ENST00000579262 949 ntBASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 KC877982.1-201ENST00000602313 470 ntBASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 DUXAP4-201ENST00000603046 613 ntBASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 AC243312.2-201ENST00000623340 601 ntBASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 AC098679.4-201ENST00000624241 654 ntBASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 PISRT1-201ENST00000626175 531 ntBASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC9Q9Y3X0 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 TAB3P1-202ENST00000452645 1634 ntBASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms