Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 MFSD8-233ENST00000641482 4860 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 Y_RNA.493-201ENST00000384422 102 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 RNU6-83P-201ENST00000384568 112 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 SNRPEP2-201ENST00000397592 279 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 RPL22P18-201ENST00000417197 377 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 TOMM22P1-201ENST00000418578 312 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 FNDC3CP-201ENST00000420795 1155 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 AC127537.2-201ENST00000439258 465 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 MTND2P20-201ENST00000440805 661 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 AL358232.1-201ENST00000448030 501 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 TRGVB-201ENST00000453257 471 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 AC007967.1-201ENST00000455422 1159 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 RPL7L1P8-201ENST00000469911 741 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 RPL23AP55-201ENST00000498163 452 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 AC093767.1-201ENST00000504523 156 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 WBP1LP4-201ENST00000505043 344 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 AC021146.8-201ENST00000507455 733 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 FABP5P12-201ENST00000515543 389 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 RNY4P37-201ENST00000516225 96 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 EEF1A1P37-201ENST00000522748 715 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 AC007458.1-201ENST00000542812 373 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 NBEAP1-201ENST00000554452 979 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 OR4K7P-201ENST00000580232 945 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 AC006927.4-201ENST00000639187 543 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 AC093908.1-201ENST00000623125 8092 ntBASIC3.81□□□□□ -1.8
CPSF3Q9UKF6 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 RNU6-263P-201ENST00000363811 107 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 RNU4-28P-201ENST00000364739 141 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 RNU6-621P-201ENST00000364752 109 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 RNU6-629P-201ENST00000384061 103 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 RNU6-761P-201ENST00000384148 107 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 MIR183-201ENST00000384958 110 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 SNORD17-201ENST00000390930 237 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 AC009237.5-201ENST00000414271 501 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 HMGB1P49-201ENST00000418882 569 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 MTCYBP11-201ENST00000447254 1109 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 snoU13.24-201ENST00000458998 104 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 PLGLA-201ENST00000465668 449 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 AC078785.3-201ENST00000476607 425 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 RPS3AP50-201ENST00000487064 803 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 RPL7P38-201ENST00000488396 739 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 RNU2-27P-201ENST00000516185 142 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 RNU6-1073P-201ENST00000517182 106 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 MRPS36P3-201ENST00000519284 130 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 AP001636.2-201ENST00000525517 696 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 AC026333.2-201ENST00000542164 106 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 202.8 ms