Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
COL7A1Q02388 AL590004.2-201ENST00000404787 371 ntBASIC1.58□□□□□ -2.16
COL7A1Q02388 RPL23AP14-201ENST00000468281 468 ntBASIC1.58□□□□□ -2.16
COL7A1Q02388 AC147055.1-201ENST00000509261 750 ntBASIC1.58□□□□□ -2.16
COL7A1Q02388 RNA5SP200-201ENST00000516360 103 ntBASIC1.58□□□□□ -2.16
COL7A1Q02388 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC1.58□□□□□ -2.16
COL7A1Q02388 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC1.58□□□□□ -2.16
COL7A1Q02388 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
COL7A1Q02388 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
COL7A1Q02388 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC1.57□□□□□ -2.16
COL7A1Q02388 AC092185.1-201ENST00000491371 97 ntBASIC1.57□□□□□ -2.16
COL7A1Q02388 ARL2BPP2-201ENST00000550907 489 ntBASIC1.57□□□□□ -2.16
COL7A1Q02388 AC011492.1-201ENST00000600023 315 ntBASIC1.57□□□□□ -2.16
COL7A1Q02388 AL356266.1-201ENST00000623311 483 ntBASIC1.57□□□□□ -2.16
COL7A1Q02388 HSP90AA5P-201ENST00000438353 2192 ntBASIC1.57□□□□□ -2.16
COL7A1Q02388 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
COL7A1Q02388 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC1.57□□□□□ -2.16
COL7A1Q02388 MIR221-201ENST00000385135 110 ntBASIC1.57□□□□□ -2.16
COL7A1Q02388 UQCRFS1P3-201ENST00000407697 385 ntBASIC1.57□□□□□ -2.16
COL7A1Q02388 AL159169.1-201ENST00000421119 127 ntBASIC1.57□□□□□ -2.16
COL7A1Q02388 IPMKP1-201ENST00000425988 855 ntBASIC1.57□□□□□ -2.16
COL7A1Q02388 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC1.57□□□□□ -2.16
COL7A1Q02388 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC1.57□□□□□ -2.16
COL7A1Q02388 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC1.57□□□□□ -2.16
COL7A1Q02388 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.57□□□□□ -2.16
COL7A1Q02388 AC104090.1-201ENST00000506341 1171 ntBASIC1.57□□□□□ -2.16
COL7A1Q02388 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC1.57□□□□□ -2.16
COL7A1Q02388 RNU6-1231P-201ENST00000517185 103 ntBASIC1.57□□□□□ -2.16
COL7A1Q02388 AC026241.1-201ENST00000517873 2142 ntBASIC1.57□□□□□ -2.16
COL7A1Q02388 OR5D17P-201ENST00000531492 978 ntBASIC1.57□□□□□ -2.16
COL7A1Q02388 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC1.57□□□□□ -2.16
COL7A1Q02388 AC105137.2-201ENST00000569073 466 ntBASIC1.57□□□□□ -2.16
COL7A1Q02388 MIR4255-201ENST00000579351 72 ntBASIC1.57□□□□□ -2.16
COL7A1Q02388 AC126118.1-201ENST00000607744 628 ntBASIC1.57□□□□□ -2.16
COL7A1Q02388 GMFB-210ENST00000628554 639 ntTSL 4 BASIC1.57□□□□□ -2.16
COL7A1Q02388 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC1.57□□□□□ -2.16
COL7A1Q02388 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
COL7A1Q02388 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC1.57□□□□□ -2.16
COL7A1Q02388 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC1.57□□□□□ -2.16
COL7A1Q02388 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
COL7A1Q02388 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC1.57□□□□□ -2.16
COL7A1Q02388 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
COL7A1Q02388 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
COL7A1Q02388 RNU2-17P-201ENST00000410290 190 ntBASIC1.56□□□□□ -2.16
COL7A1Q02388 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC1.56□□□□□ -2.16
COL7A1Q02388 AL163540.1-201ENST00000485382 386 ntBASIC1.56□□□□□ -2.16
COL7A1Q02388 OR4R2P-201ENST00000530815 597 ntBASIC1.56□□□□□ -2.16
COL7A1Q02388 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.56□□□□□ -2.16
COL7A1Q02388 LINC00216-201ENST00000623548 1126 ntBASIC1.56□□□□□ -2.16
COL7A1Q02388 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC1.56□□□□□ -2.16
COL7A1Q02388 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC1.56□□□□□ -2.16
COL7A1Q02388 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC1.56□□□□□ -2.16
COL7A1Q02388 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
COL7A1Q02388 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC1.56□□□□□ -2.16
COL7A1Q02388 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC1.56□□□□□ -2.16
COL7A1Q02388 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.56□□□□□ -2.16
COL7A1Q02388 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC1.56□□□□□ -2.16
COL7A1Q02388 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
COL7A1Q02388 CASP3-203ENST00000393588 677 ntTSL 4 BASIC1.56□□□□□ -2.16
COL7A1Q02388 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
COL7A1Q02388 AL034379.1-201ENST00000423216 253 ntBASIC1.56□□□□□ -2.16
COL7A1Q02388 AL390023.1-201ENST00000428836 262 ntBASIC1.56□□□□□ -2.16
COL7A1Q02388 RAC1P5-201ENST00000512182 576 ntBASIC1.56□□□□□ -2.16
COL7A1Q02388 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC1.56□□□□□ -2.16
COL7A1Q02388 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.56□□□□□ -2.16
COL7A1Q02388 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC1.56□□□□□ -2.16
COL7A1Q02388 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC1.56□□□□□ -2.16
COL7A1Q02388 AL139286.1-201ENST00000604465 483 ntBASIC1.56□□□□□ -2.16
COL7A1Q02388 AC008432.1-201ENST00000615912 1320 ntBASIC1.56□□□□□ -2.16
COL7A1Q02388 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
COL7A1Q02388 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC1.56□□□□□ -2.16
COL7A1Q02388 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
COL7A1Q02388 Y_RNA.295-201ENST00000364918 102 ntBASIC1.56□□□□□ -2.16
COL7A1Q02388 LSM5-205ENST00000409952 687 ntTSL 4 BASIC1.56□□□□□ -2.16
COL7A1Q02388 AL591704.1-201ENST00000432574 275 ntBASIC1.56□□□□□ -2.16
COL7A1Q02388 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC1.56□□□□□ -2.16
COL7A1Q02388 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC1.56□□□□□ -2.16
COL7A1Q02388 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC1.56□□□□□ -2.16
COL7A1Q02388 AC135279.1-201ENST00000543493 504 ntBASIC1.56□□□□□ -2.16
COL7A1Q02388 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC1.56□□□□□ -2.16
COL7A1Q02388 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC1.56□□□□□ -2.16
COL7A1Q02388 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC1.56□□□□□ -2.16
COL7A1Q02388 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC1.56□□□□□ -2.16
COL7A1Q02388 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC1.56□□□□□ -2.16
COL7A1Q02388 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC1.56□□□□□ -2.16
COL7A1Q02388 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.55□□□□□ -2.16
COL7A1Q02388 THUMPD3P1-201ENST00000506556 1480 ntBASIC1.55□□□□□ -2.16
COL7A1Q02388 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
COL7A1Q02388 SNORA68.2-201ENST00000391263 128 ntBASIC1.55□□□□□ -2.16
COL7A1Q02388 RPS20P25-201ENST00000412447 352 ntBASIC1.55□□□□□ -2.16
COL7A1Q02388 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC1.55□□□□□ -2.16
COL7A1Q02388 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC1.55□□□□□ -2.16
COL7A1Q02388 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC1.55□□□□□ -2.16
COL7A1Q02388 AC125238.1-201ENST00000448842 249 ntBASIC1.55□□□□□ -2.16
COL7A1Q02388 RPL21P71-201ENST00000465598 459 ntBASIC1.55□□□□□ -2.16
COL7A1Q02388 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC1.55□□□□□ -2.16
COL7A1Q02388 RNA5SP220-201ENST00000516298 104 ntBASIC1.55□□□□□ -2.16
COL7A1Q02388 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC1.55□□□□□ -2.16
COL7A1Q02388 AGGF1P8-201ENST00000562979 1000 ntBASIC1.55□□□□□ -2.16
COL7A1Q02388 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms