Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 RNU6-55P-201ENST00000411092 107 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 RNU6-954P-201ENST00000411355 107 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 PAICSP7-201ENST00000419829 962 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC3.49□□□□□ -1.85
HMGCS2P54868 MTCYBP42-201ENST00000444653 1130 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 NAP1L1P3-201ENST00000462291 880 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 AC078817.1-201ENST00000492623 435 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 AC083906.5-201ENST00000503722 328 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 HIGD1AP13-201ENST00000509878 289 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 MTCO1P30-201ENST00000515244 580 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 RNU2-58P-201ENST00000516403 183 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 RN7SKP277-201ENST00000516895 283 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 RN7SKP96-201ENST00000516948 297 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 SCARNA20.6-201ENST00000517251 106 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 OR10V3P-201ENST00000525712 725 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 MTCO3P15-201ENST00000526563 574 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 DEFB130C-202ENST00000530001 230 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 AC092851.1-201ENST00000535964 478 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.49□□□□□ -1.85
HMGCS2P54868 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC3.49□□□□□ -1.85
HMGCS2P54868 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC3.49□□□□□ -1.85
HMGCS2P54868 MTCYBP23-201ENST00000558717 1102 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 MIR4319-201ENST00000577285 85 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.49□□□□□ -1.85
HMGCS2P54868 MIR4666A-201ENST00000580160 79 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 AC002487.1-201ENST00000604565 994 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 AC110741.2-201ENST00000605278 268 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 PART1_2.1-201ENST00000612397 250 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
HMGCS2P54868 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.49□□□□□ -1.85
HMGCS2P54868 MTCO1P24-201ENST00000515438 1558 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 AC046144.1-201ENST00000478559 1853 ntBASIC3.49□□□□□ -1.85
HMGCS2P54868 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HMGCS2P54868 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HMGCS2P54868 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC3.48□□□□□ -1.85
HMGCS2P54868 AL035425.3-201ENST00000564206 4996 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.48□□□□□ -1.85
HMGCS2P54868 RNU4-51P-201ENST00000364206 140 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 RNU6-619P-201ENST00000365146 108 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.48□□□□□ -1.85
HMGCS2P54868 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC3.48□□□□□ -1.85
HMGCS2P54868 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC3.48□□□□□ -1.85
HMGCS2P54868 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC3.48□□□□□ -1.85
HMGCS2P54868 NANOGP5-201ENST00000424456 877 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC3.48□□□□□ -1.85
HMGCS2P54868 RAB11AP1-201ENST00000442978 646 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 RPL7P59-201ENST00000447700 943 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC3.48□□□□□ -1.85
HMGCS2P54868 RPL37P4-201ENST00000448908 268 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 BX276092.4-201ENST00000452056 248 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HMGCS2P54868 AC134050.1-201ENST00000495088 933 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC3.48□□□□□ -1.85
HMGCS2P54868 AC008885.2-201ENST00000509506 930 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 FABP5P12-201ENST00000515543 389 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 RNU4-60P-201ENST00000517239 135 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 COX6CP8-201ENST00000522620 226 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.48□□□□□ -1.85
HMGCS2P54868 OR4C2P-201ENST00000530855 1064 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 AL442163.2-201ENST00000553912 710 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 AL132857.1-201ENST00000555180 708 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC3.48□□□□□ -1.85
HMGCS2P54868 CYCSP39-201ENST00000565821 309 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 AGGF1P5-201ENST00000567900 919 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 AC006270.2-201ENST00000578523 652 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 AL583856.2-201ENST00000606298 543 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 AC106052.1-201ENST00000608029 497 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 AP004247.3-201ENST00000608682 624 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 AC009974.1-201ENST00000608881 455 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 AC107294.1-201ENST00000609524 467 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 AC009237.15-201ENST00000610252 501 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 AL121895.2-201ENST00000619558 447 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 AL109659.3-201ENST00000624985 950 ntBASIC3.48□□□□□ -1.85
HMGCS2P54868 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.48□□□□□ -1.85
HMGCS2P54868 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.47□□□□□ -1.85
HMGCS2P54868 AC004944.1-201ENST00000517807 3059 ntBASIC3.47□□□□□ -1.85
HMGCS2P54868 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
HMGCS2P54868 EXOC5P1-201ENST00000510543 1969 ntBASIC3.47□□□□□ -1.85
HMGCS2P54868 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.47□□□□□ -1.85
HMGCS2P54868 HSPA8P1-201ENST00000425843 1833 ntBASIC3.47□□□□□ -1.85
HMGCS2P54868 AC011978.2-201ENST00000569835 2054 ntBASIC3.47□□□□□ -1.85
HMGCS2P54868 SGO1P1-201ENST00000603525 1447 ntBASIC3.47□□□□□ -1.85
HMGCS2P54868 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HMGCS2P54868 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
HMGCS2P54868 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
HMGCS2P54868 Y_RNA.472-201ENST00000384322 102 ntBASIC3.47□□□□□ -1.85
HMGCS2P54868 MIR16-1-201ENST00000385271 89 ntBASIC3.47□□□□□ -1.85
HMGCS2P54868 OR51A3P-201ENST00000413596 924 ntBASIC3.47□□□□□ -1.85
HMGCS2P54868 CKS1BP5-201ENST00000434172 273 ntBASIC3.47□□□□□ -1.85
HMGCS2P54868 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC3.47□□□□□ -1.85
HMGCS2P54868 AL138799.3-201ENST00000438968 350 ntBASIC3.47□□□□□ -1.85
HMGCS2P54868 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC3.47□□□□□ -1.85
HMGCS2P54868 RPL23AP33-201ENST00000442301 452 ntBASIC3.47□□□□□ -1.85
HMGCS2P54868 RPS24P13-201ENST00000442520 397 ntBASIC3.47□□□□□ -1.85
HMGCS2P54868 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC3.47□□□□□ -1.85
HMGCS2P54868 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC3.47□□□□□ -1.85
HMGCS2P54868 EXTL2P1-201ENST00000446218 416 ntBASIC3.47□□□□□ -1.85
HMGCS2P54868 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC3.47□□□□□ -1.85
HMGCS2P54868 HMGN2P21-201ENST00000447764 270 ntBASIC3.47□□□□□ -1.85
HMGCS2P54868 AC108938.1-201ENST00000451204 136 ntBASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms