Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RPS6P12-201ENST00000432491 726 ntBASIC4.76□□□□□ -1.65
SMARCA1P28370 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC4.76□□□□□ -1.65
SMARCA1P28370 AC005297.2-201ENST00000450430 606 ntBASIC4.76□□□□□ -1.65
SMARCA1P28370 NUTF2P7-201ENST00000453086 375 ntBASIC4.76□□□□□ -1.65
SMARCA1P28370 OR6K1P-201ENST00000456766 971 ntBASIC4.76□□□□□ -1.65
SMARCA1P28370 SNORD42A-201ENST00000459584 64 ntBASIC4.76□□□□□ -1.65
SMARCA1P28370 AC146507.1-201ENST00000468335 354 ntBASIC4.76□□□□□ -1.65
SMARCA1P28370 HMGB1P36-201ENST00000487709 576 ntBASIC4.76□□□□□ -1.65
SMARCA1P28370 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC4.76□□□□□ -1.65
SMARCA1P28370 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
SMARCA1P28370 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
SMARCA1P28370 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.76□□□□□ -1.65
SMARCA1P28370 AC034159.1-201ENST00000513885 583 ntBASIC4.76□□□□□ -1.65
SMARCA1P28370 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC4.76□□□□□ -1.65
SMARCA1P28370 RN7SKP21-201ENST00000516503 220 ntBASIC4.76□□□□□ -1.65
SMARCA1P28370 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SMARCA1P28370 COX6CP8-201ENST00000522620 226 ntBASIC4.76□□□□□ -1.65
SMARCA1P28370 MAL2-203ENST00000534619 578 ntTSL 4 BASIC4.76□□□□□ -1.65
SMARCA1P28370 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC4.76□□□□□ -1.65
SMARCA1P28370 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.76□□□□□ -1.65
SMARCA1P28370 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC4.76□□□□□ -1.65
SMARCA1P28370 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.76□□□□□ -1.65
SMARCA1P28370 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC4.76□□□□□ -1.65
SMARCA1P28370 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.76□□□□□ -1.65
SMARCA1P28370 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.76□□□□□ -1.65
SMARCA1P28370 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC4.76□□□□□ -1.65
SMARCA1P28370 AP003465.2-201ENST00000602571 373 ntBASIC4.76□□□□□ -1.65
SMARCA1P28370 AL009028.1-201ENST00000604895 802 ntBASIC4.76□□□□□ -1.65
SMARCA1P28370 MIR6867-201ENST00000610636 67 ntBASIC4.76□□□□□ -1.65
SMARCA1P28370 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.76□□□□□ -1.65
SMARCA1P28370 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
SMARCA1P28370 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.76□□□□□ -1.65
SMARCA1P28370 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
SMARCA1P28370 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SMARCA1P28370 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SMARCA1P28370 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
SMARCA1P28370 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SMARCA1P28370 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SMARCA1P28370 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SMARCA1P28370 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
SMARCA1P28370 RNA5SP513-201ENST00000364648 118 ntBASIC4.75□□□□□ -1.65
SMARCA1P28370 AL031679.1-201ENST00000400616 525 ntBASIC4.75□□□□□ -1.65
SMARCA1P28370 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.75□□□□□ -1.65
SMARCA1P28370 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC4.75□□□□□ -1.65
SMARCA1P28370 C8orf59P1-201ENST00000429930 303 ntBASIC4.75□□□□□ -1.65
SMARCA1P28370 AL358472.1-201ENST00000431295 329 ntBASIC4.75□□□□□ -1.65
SMARCA1P28370 AC109583.1-201ENST00000432156 268 ntBASIC4.75□□□□□ -1.65
SMARCA1P28370 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC4.75□□□□□ -1.65
SMARCA1P28370 RSU1P2-202ENST00000437884 485 ntBASIC4.75□□□□□ -1.65
SMARCA1P28370 AC002381.1-201ENST00000447049 280 ntBASIC4.75□□□□□ -1.65
SMARCA1P28370 RPL29P29-201ENST00000448725 423 ntBASIC4.75□□□□□ -1.65
SMARCA1P28370 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC4.75□□□□□ -1.65
SMARCA1P28370 PLGLA-201ENST00000465668 449 ntBASIC4.75□□□□□ -1.65
SMARCA1P28370 AC106872.3-201ENST00000495104 446 ntBASIC4.75□□□□□ -1.65
SMARCA1P28370 AC022447.3-201ENST00000506865 495 ntBASIC4.75□□□□□ -1.65
SMARCA1P28370 AC017037.1-201ENST00000508460 471 ntBASIC4.75□□□□□ -1.65
SMARCA1P28370 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC4.75□□□□□ -1.65
SMARCA1P28370 AC024589.1-201ENST00000512207 263 ntBASIC4.75□□□□□ -1.65
SMARCA1P28370 RNU7-143P-201ENST00000516781 65 ntBASIC4.75□□□□□ -1.65
SMARCA1P28370 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC4.75□□□□□ -1.65
SMARCA1P28370 AC022861.1-201ENST00000522981 663 ntBASIC4.75□□□□□ -1.65
SMARCA1P28370 AP002453.2-201ENST00000533503 320 ntBASIC4.75□□□□□ -1.65
SMARCA1P28370 AC007224.1-201ENST00000564410 144 ntBASIC4.75□□□□□ -1.65
SMARCA1P28370 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.75□□□□□ -1.65
SMARCA1P28370 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.75□□□□□ -1.65
SMARCA1P28370 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.75□□□□□ -1.65
SMARCA1P28370 AC022916.3-201ENST00000592961 742 ntBASIC4.75□□□□□ -1.65
SMARCA1P28370 AL445264.1-201ENST00000621719 171 ntBASIC4.75□□□□□ -1.65
SMARCA1P28370 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SMARCA1P28370 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SMARCA1P28370 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.75□□□□□ -1.65
SMARCA1P28370 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.75□□□□□ -1.65
SMARCA1P28370 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SMARCA1P28370 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
SMARCA1P28370 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SMARCA1P28370 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SMARCA1P28370 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC4.74□□□□□ -1.65
SMARCA1P28370 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
SMARCA1P28370 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
SMARCA1P28370 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC4.74□□□□□ -1.65
SMARCA1P28370 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
SMARCA1P28370 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.74□□□□□ -1.65
SMARCA1P28370 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
SMARCA1P28370 MIR448-201ENST00000362131 111 ntBASIC4.74□□□□□ -1.65
SMARCA1P28370 RNU1-13P-201ENST00000384499 162 ntBASIC4.74□□□□□ -1.65
SMARCA1P28370 RNU11-4P-201ENST00000391149 133 ntBASIC4.74□□□□□ -1.65
SMARCA1P28370 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SMARCA1P28370 RNA5SP239-201ENST00000410218 129 ntBASIC4.74□□□□□ -1.65
SMARCA1P28370 RNU6-248P-201ENST00000410720 107 ntBASIC4.74□□□□□ -1.65
SMARCA1P28370 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SMARCA1P28370 HSFY6P-201ENST00000445573 403 ntBASIC4.74□□□□□ -1.65
SMARCA1P28370 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC4.74□□□□□ -1.65
SMARCA1P28370 PAXBP1P1-201ENST00000449315 447 ntBASIC4.74□□□□□ -1.65
SMARCA1P28370 PDSS1P2-201ENST00000449397 678 ntBASIC4.74□□□□□ -1.65
SMARCA1P28370 USP9YP12-201ENST00000450481 570 ntBASIC4.74□□□□□ -1.65
SMARCA1P28370 PPIAP3-201ENST00000450588 505 ntBASIC4.74□□□□□ -1.65
SMARCA1P28370 RPL9P33-201ENST00000484311 566 ntBASIC4.74□□□□□ -1.65
SMARCA1P28370 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC4.74□□□□□ -1.65
SMARCA1P28370 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
SMARCA1P28370 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms