Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 NRBF2P5-201ENST00000603087 788 ntBASIC4.84□□□□□ -1.63
CBX4O00257 AL162413.1-201ENST00000603198 110 ntBASIC4.84□□□□□ -1.63
CBX4O00257 AC007621.1-201ENST00000604544 437 ntBASIC4.84□□□□□ -1.63
CBX4O00257 AL031176.1-201ENST00000604554 466 ntBASIC4.84□□□□□ -1.63
CBX4O00257 AL136363.1-201ENST00000605349 337 ntBASIC4.84□□□□□ -1.63
CBX4O00257 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC4.84□□□□□ -1.63
CBX4O00257 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC4.84□□□□□ -1.63
CBX4O00257 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CBX4O00257 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
CBX4O00257 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CBX4O00257 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.84□□□□□ -1.63
CBX4O00257 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.64
CBX4O00257 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.84□□□□□ -1.64
CBX4O00257 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.84□□□□□ -1.64
CBX4O00257 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CBX4O00257 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.83□□□□□ -1.64
CBX4O00257 MTCO1P9-201ENST00000505577 1534 ntBASIC4.83□□□□□ -1.64
CBX4O00257 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
CBX4O00257 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.83□□□□□ -1.64
CBX4O00257 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
CBX4O00257 RNU6-1120P-201ENST00000362988 108 ntBASIC4.83□□□□□ -1.64
CBX4O00257 RNY3P13-201ENST00000365542 102 ntBASIC4.83□□□□□ -1.64
CBX4O00257 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
CBX4O00257 U3.22-201ENST00000391120 215 ntBASIC4.83□□□□□ -1.64
CBX4O00257 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CBX4O00257 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CBX4O00257 UQCRBP1-201ENST00000421129 336 ntBASIC4.83□□□□□ -1.64
CBX4O00257 CHIAP3-201ENST00000423668 1133 ntBASIC4.83□□□□□ -1.64
CBX4O00257 RPL34P6-201ENST00000432390 345 ntBASIC4.83□□□□□ -1.64
CBX4O00257 CKS1BP5-201ENST00000434172 273 ntBASIC4.83□□□□□ -1.64
CBX4O00257 AC004938.1-201ENST00000438468 308 ntBASIC4.83□□□□□ -1.64
CBX4O00257 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.83□□□□□ -1.64
CBX4O00257 AC079781.2-201ENST00000446424 169 ntBASIC4.83□□□□□ -1.64
CBX4O00257 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC4.83□□□□□ -1.64
CBX4O00257 TPT1P14-201ENST00000448018 505 ntBASIC4.83□□□□□ -1.64
CBX4O00257 AC140076.1-201ENST00000449897 361 ntBASIC4.83□□□□□ -1.64
CBX4O00257 CEACAMP6-201ENST00000452007 574 ntBASIC4.83□□□□□ -1.64
CBX4O00257 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC4.83□□□□□ -1.64
CBX4O00257 AC010326.1-201ENST00000462726 602 ntBASIC4.83□□□□□ -1.64
CBX4O00257 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
CBX4O00257 AC021146.1-201ENST00000511202 716 ntBASIC4.83□□□□□ -1.64
CBX4O00257 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.83□□□□□ -1.64
CBX4O00257 AC017037.2-201ENST00000513850 890 ntBASIC4.83□□□□□ -1.64
CBX4O00257 RNU6-798P-201ENST00000516912 103 ntBASIC4.83□□□□□ -1.64
CBX4O00257 RN7SKP92-201ENST00000517266 244 ntBASIC4.83□□□□□ -1.64
CBX4O00257 IGKV1-32-201ENST00000519290 311 ntBASIC4.83□□□□□ -1.64
CBX4O00257 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.83□□□□□ -1.64
CBX4O00257 AC011979.2-201ENST00000527568 352 ntBASIC4.83□□□□□ -1.64
CBX4O00257 FKBP1BP1-201ENST00000553366 325 ntBASIC4.83□□□□□ -1.64
CBX4O00257 AL110118.1-201ENST00000553543 400 ntBASIC4.83□□□□□ -1.64
CBX4O00257 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.83□□□□□ -1.64
CBX4O00257 HNRNPCP4-201ENST00000571636 900 ntBASIC4.83□□□□□ -1.64
CBX4O00257 RN7SL652P-201ENST00000577769 300 ntBASIC4.83□□□□□ -1.64
CBX4O00257 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.83□□□□□ -1.64
CBX4O00257 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.83□□□□□ -1.64
CBX4O00257 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.83□□□□□ -1.64
CBX4O00257 AC008752.3-201ENST00000588113 712 ntBASIC4.83□□□□□ -1.64
CBX4O00257 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.83□□□□□ -1.64
CBX4O00257 BNIP3P30-201ENST00000601184 574 ntBASIC4.83□□□□□ -1.64
CBX4O00257 AC245517.5-201ENST00000611529 162 ntBASIC4.83□□□□□ -1.64
CBX4O00257 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CBX4O00257 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.83□□□□□ -1.64
CBX4O00257 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.83□□□□□ -1.64
CBX4O00257 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.83□□□□□ -1.64
CBX4O00257 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CBX4O00257 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.83□□□□□ -1.64
CBX4O00257 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
CBX4O00257 AL139811.1-201ENST00000424779 2299 ntBASIC4.83□□□□□ -1.64
CBX4O00257 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CBX4O00257 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CBX4O00257 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC4.82□□□□□ -1.64
CBX4O00257 AL138713.1-201ENST00000624026 2130 ntBASIC4.82□□□□□ -1.64
CBX4O00257 FAM91A3P-201ENST00000456826 2544 ntBASIC4.82□□□□□ -1.64
CBX4O00257 OR1S2-201ENST00000302592 978 ntBASIC4.82□□□□□ -1.64
CBX4O00257 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
CBX4O00257 RNA5SP479-201ENST00000364858 117 ntBASIC4.82□□□□□ -1.64
CBX4O00257 RNU1-39P-201ENST00000383897 165 ntBASIC4.82□□□□□ -1.64
CBX4O00257 RNU6-356P-201ENST00000384140 107 ntBASIC4.82□□□□□ -1.64
CBX4O00257 U3.35-201ENST00000408405 208 ntBASIC4.82□□□□□ -1.64
CBX4O00257 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC4.82□□□□□ -1.64
CBX4O00257 AL353193.1-201ENST00000421444 268 ntBASIC4.82□□□□□ -1.64
CBX4O00257 EIF4HP2-201ENST00000424380 563 ntBASIC4.82□□□□□ -1.64
CBX4O00257 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.82□□□□□ -1.64
CBX4O00257 MTND6P18-201ENST00000439477 513 ntBASIC4.82□□□□□ -1.64
CBX4O00257 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC4.82□□□□□ -1.64
CBX4O00257 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.82□□□□□ -1.64
CBX4O00257 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC4.82□□□□□ -1.64
CBX4O00257 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC4.82□□□□□ -1.64
CBX4O00257 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.82□□□□□ -1.64
CBX4O00257 RPS17P13-201ENST00000448974 407 ntBASIC4.82□□□□□ -1.64
CBX4O00257 RNU7-59P-201ENST00000459101 61 ntBASIC4.82□□□□□ -1.64
CBX4O00257 AL049714.1-201ENST00000466686 347 ntBASIC4.82□□□□□ -1.64
CBX4O00257 RPL36AP51-201ENST00000487216 318 ntBASIC4.82□□□□□ -1.64
CBX4O00257 AC069439.1-201ENST00000494739 167 ntBASIC4.82□□□□□ -1.64
CBX4O00257 RNU6-410P-201ENST00000517006 107 ntBASIC4.82□□□□□ -1.64
CBX4O00257 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.82□□□□□ -1.64
CBX4O00257 AC104383.1-201ENST00000530297 370 ntBASIC4.82□□□□□ -1.64
CBX4O00257 CR383656.7-201ENST00000548164 174 ntBASIC4.82□□□□□ -1.64
CBX4O00257 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.82□□□□□ -1.64
CBX4O00257 MIR4277-201ENST00000578298 84 ntBASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms