Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHA3Q9Y5H8 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHA3Q9Y5H8 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 AC142086.2-201ENST00000569753 217 ntBASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.05■□□□□ 0.8
PCDHA3Q9Y5H8 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHA3Q9Y5H8 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
PCDHA3Q9Y5H8 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHA3Q9Y5H8 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHA3Q9Y5H8 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.04■□□□□ 0.8
PCDHA3Q9Y5H8 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHA3Q9Y5H8 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHA3Q9Y5H8 AC104581.1-202ENST00000635932 2618 ntBASIC20.04■□□□□ 0.8
PCDHA3Q9Y5H8 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHA3Q9Y5H8 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.04■□□□□ 0.8
PCDHA3Q9Y5H8 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.04■□□□□ 0.8
PCDHA3Q9Y5H8 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHA3Q9Y5H8 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
PCDHA3Q9Y5H8 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.04■□□□□ 0.8
PCDHA3Q9Y5H8 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHA3Q9Y5H8 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHA3Q9Y5H8 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.04■□□□□ 0.8
PCDHA3Q9Y5H8 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHA3Q9Y5H8 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.04■□□□□ 0.8
PCDHA3Q9Y5H8 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 WIZP1-201ENST00000531444 2299 ntBASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHA3Q9Y5H8 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHA3Q9Y5H8 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
PCDHA3Q9Y5H8 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHA3Q9Y5H8 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHA3Q9Y5H8 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHA3Q9Y5H8 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHA3Q9Y5H8 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
PCDHA3Q9Y5H8 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.02■□□□□ 0.8
PCDHA3Q9Y5H8 POM121L13P-201ENST00000422362 380 ntBASIC20.02■□□□□ 0.8
PCDHA3Q9Y5H8 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.02■□□□□ 0.8
PCDHA3Q9Y5H8 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.02■□□□□ 0.8
PCDHA3Q9Y5H8 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.02■□□□□ 0.8
PCDHA3Q9Y5H8 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHA3Q9Y5H8 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHA3Q9Y5H8 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHA3Q9Y5H8 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
PCDHA3Q9Y5H8 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHA3Q9Y5H8 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHA3Q9Y5H8 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
PCDHA3Q9Y5H8 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
PCDHA3Q9Y5H8 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
PCDHA3Q9Y5H8 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.79
PCDHA3Q9Y5H8 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms