Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC36.47■■■■□ 3.43
SHROOM4Q9ULL8 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC36.47■■■■□ 3.43
SHROOM4Q9ULL8 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC36.47■■■■□ 3.43
SHROOM4Q9ULL8 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC36.47■■■■□ 3.43
SHROOM4Q9ULL8 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 AC106795.1-205ENST00000512851 1056 ntBASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 MIR3180-1-201ENST00000580374 94 ntBASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 NT5C-210ENST00000582160 860 ntTSL 2 BASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 MIR3180-3-201ENST00000584616 94 ntBASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 AC009237.14-201ENST00000609975 1594 ntBASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC36.46■■■■□ 3.43
SHROOM4Q9ULL8 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC36.45■■■■□ 3.43
SHROOM4Q9ULL8 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC36.45■■■■□ 3.43
SHROOM4Q9ULL8 TCF3P1-201ENST00000423021 1937 ntBASIC36.45■■■■□ 3.43
SHROOM4Q9ULL8 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC36.45■■■■□ 3.43
SHROOM4Q9ULL8 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC36.45■■■■□ 3.43
SHROOM4Q9ULL8 IFNL4P1-201ENST00000607083 540 ntBASIC36.45■■■■□ 3.43
SHROOM4Q9ULL8 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC36.45■■■■□ 3.43
SHROOM4Q9ULL8 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC36.45■■■■□ 3.43
SHROOM4Q9ULL8 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC36.45■■■■□ 3.43
SHROOM4Q9ULL8 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC36.45■■■■□ 3.43
SHROOM4Q9ULL8 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC36.45■■■■□ 3.43
SHROOM4Q9ULL8 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC36.44■■■■□ 3.42
SHROOM4Q9ULL8 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC36.44■■■■□ 3.42
SHROOM4Q9ULL8 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC36.44■■■■□ 3.42
SHROOM4Q9ULL8 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC36.44■■■■□ 3.42
SHROOM4Q9ULL8 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC36.44■■■■□ 3.42
SHROOM4Q9ULL8 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC36.44■■■■□ 3.42
SHROOM4Q9ULL8 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC36.44■■■■□ 3.42
SHROOM4Q9ULL8 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC36.44■■■■□ 3.42
SHROOM4Q9ULL8 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC36.44■■■■□ 3.42
SHROOM4Q9ULL8 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC36.44■■■■□ 3.42
SHROOM4Q9ULL8 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC36.44■■■■□ 3.42
SHROOM4Q9ULL8 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC36.43■■■■□ 3.42
SHROOM4Q9ULL8 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC36.43■■■■□ 3.42
SHROOM4Q9ULL8 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC36.43■■■■□ 3.42
SHROOM4Q9ULL8 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC36.43■■■■□ 3.42
SHROOM4Q9ULL8 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC36.43■■■■□ 3.42
SHROOM4Q9ULL8 AC140113.3-201ENST00000605663 199 ntBASIC36.43■■■■□ 3.42
SHROOM4Q9ULL8 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC36.43■■■■□ 3.42
SHROOM4Q9ULL8 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC36.43■■■■□ 3.42
SHROOM4Q9ULL8 KRT18P1-202ENST00000452408 1331 ntBASIC36.43■■■■□ 3.42
SHROOM4Q9ULL8 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC36.43■■■■□ 3.42
SHROOM4Q9ULL8 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC36.43■■■■□ 3.42
SHROOM4Q9ULL8 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC36.43■■■■□ 3.42
SHROOM4Q9ULL8 HBZP1-201ENST00000354915 429 ntBASIC36.43■■■■□ 3.42
SHROOM4Q9ULL8 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC36.43■■■■□ 3.42
SHROOM4Q9ULL8 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC36.43■■■■□ 3.42
SHROOM4Q9ULL8 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC36.43■■■■□ 3.42
SHROOM4Q9ULL8 FGF14-AS2-201ENST00000606448 1074 ntBASIC36.43■■■■□ 3.42
SHROOM4Q9ULL8 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC36.43■■■■□ 3.42
SHROOM4Q9ULL8 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC36.43■■■■□ 3.42
SHROOM4Q9ULL8 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC36.43■■■■□ 3.42
SHROOM4Q9ULL8 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC36.42■■■■□ 3.42
SHROOM4Q9ULL8 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC36.42■■■■□ 3.42
SHROOM4Q9ULL8 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC36.42■■■■□ 3.42
SHROOM4Q9ULL8 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC36.42■■■■□ 3.42
SHROOM4Q9ULL8 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC36.42■■■■□ 3.42
SHROOM4Q9ULL8 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC36.42■■■■□ 3.42
SHROOM4Q9ULL8 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC36.42■■■■□ 3.42
SHROOM4Q9ULL8 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC36.42■■■■□ 3.42
SHROOM4Q9ULL8 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC36.42■■■■□ 3.42
SHROOM4Q9ULL8 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC36.42■■■■□ 3.42
SHROOM4Q9ULL8 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC36.42■■■■□ 3.42
SHROOM4Q9ULL8 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC36.42■■■■□ 3.42
SHROOM4Q9ULL8 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC36.42■■■■□ 3.42
SHROOM4Q9ULL8 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC36.41■■■■□ 3.42
SHROOM4Q9ULL8 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC36.41■■■■□ 3.42
SHROOM4Q9ULL8 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC36.41■■■■□ 3.42
SHROOM4Q9ULL8 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC36.41■■■■□ 3.42
SHROOM4Q9ULL8 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC36.41■■■■□ 3.42
SHROOM4Q9ULL8 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC36.41■■■■□ 3.42
SHROOM4Q9ULL8 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC36.41■■■■□ 3.42
SHROOM4Q9ULL8 AL031008.1-201ENST00000619963 541 ntBASIC36.41■■■■□ 3.42
SHROOM4Q9ULL8 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC36.41■■■■□ 3.42
SHROOM4Q9ULL8 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC36.41■■■■□ 3.42
SHROOM4Q9ULL8 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC36.41■■■■□ 3.42
SHROOM4Q9ULL8 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC36.4■■■■□ 3.42
SHROOM4Q9ULL8 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC36.4■■■■□ 3.42
SHROOM4Q9ULL8 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC36.4■■■■□ 3.42
SHROOM4Q9ULL8 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC36.4■■■■□ 3.42
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms