Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
VPS28Q9UK41 ZNF815P-204ENST00000434898 1737 ntBASIC19.73■□□□□ 0.75
VPS28Q9UK41 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS28Q9UK41 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS28Q9UK41 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS28Q9UK41 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS28Q9UK41 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS28Q9UK41 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS28Q9UK41 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS28Q9UK41 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS28Q9UK41 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS28Q9UK41 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS28Q9UK41 AC087499.1-201ENST00000418141 1075 ntBASIC19.73■□□□□ 0.75
VPS28Q9UK41 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS28Q9UK41 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.73■□□□□ 0.75
VPS28Q9UK41 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS28Q9UK41 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.73■□□□□ 0.75
VPS28Q9UK41 DGCR10-201ENST00000609839 495 ntBASIC19.73■□□□□ 0.75
VPS28Q9UK41 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS28Q9UK41 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS28Q9UK41 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS28Q9UK41 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS28Q9UK41 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS28Q9UK41 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
VPS28Q9UK41 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS28Q9UK41 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS28Q9UK41 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS28Q9UK41 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS28Q9UK41 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
VPS28Q9UK41 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS28Q9UK41 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS28Q9UK41 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS28Q9UK41 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS28Q9UK41 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS28Q9UK41 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS28Q9UK41 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS28Q9UK41 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
VPS28Q9UK41 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS28Q9UK41 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS28Q9UK41 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS28Q9UK41 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS28Q9UK41 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS28Q9UK41 AL390955.1-201ENST00000428694 934 ntBASIC19.72■□□□□ 0.75
VPS28Q9UK41 FAM207BP-201ENST00000447172 505 ntBASIC19.72■□□□□ 0.75
VPS28Q9UK41 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
VPS28Q9UK41 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS28Q9UK41 AC091390.4-202ENST00000476426 537 ntBASIC19.72■□□□□ 0.75
VPS28Q9UK41 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.72■□□□□ 0.75
VPS28Q9UK41 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS28Q9UK41 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.72■□□□□ 0.75
VPS28Q9UK41 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.72■□□□□ 0.75
VPS28Q9UK41 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS28Q9UK41 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.72■□□□□ 0.75
VPS28Q9UK41 TREX1-205ENST00000625293 1783 ntBASIC19.72■□□□□ 0.75
VPS28Q9UK41 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS28Q9UK41 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS28Q9UK41 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS28Q9UK41 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS28Q9UK41 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
VPS28Q9UK41 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS28Q9UK41 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS28Q9UK41 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS28Q9UK41 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS28Q9UK41 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.71■□□□□ 0.75
VPS28Q9UK41 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
VPS28Q9UK41 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS28Q9UK41 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS28Q9UK41 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS28Q9UK41 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS28Q9UK41 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS28Q9UK41 AC008040.2-201ENST00000461049 708 ntBASIC19.71■□□□□ 0.75
VPS28Q9UK41 AC097488.1-201ENST00000507834 756 ntBASIC19.71■□□□□ 0.75
VPS28Q9UK41 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS28Q9UK41 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS28Q9UK41 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS28Q9UK41 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS28Q9UK41 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS28Q9UK41 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS28Q9UK41 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS28Q9UK41 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS28Q9UK41 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
VPS28Q9UK41 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS28Q9UK41 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
VPS28Q9UK41 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS28Q9UK41 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS28Q9UK41 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS28Q9UK41 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS28Q9UK41 AC104417.2-201ENST00000562989 1793 ntBASIC19.7■□□□□ 0.74
VPS28Q9UK41 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
VPS28Q9UK41 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS28Q9UK41 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS28Q9UK41 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
VPS28Q9UK41 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS28Q9UK41 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
VPS28Q9UK41 AC211429.1-201ENST00000415277 523 ntBASIC19.7■□□□□ 0.74
VPS28Q9UK41 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.7■□□□□ 0.74
VPS28Q9UK41 FITM1-202ENST00000559294 800 ntBASIC19.7■□□□□ 0.74
VPS28Q9UK41 SLC25A1P4-201ENST00000567977 778 ntBASIC19.7■□□□□ 0.74
VPS28Q9UK41 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.7■□□□□ 0.74
VPS28Q9UK41 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms