Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC22.05■■□□□ 1.12
DDX41Q9UJV9 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC22.05■■□□□ 1.12
DDX41Q9UJV9 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
DDX41Q9UJV9 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
DDX41Q9UJV9 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC22.05■■□□□ 1.12
DDX41Q9UJV9 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
DDX41Q9UJV9 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC22.05■■□□□ 1.12
DDX41Q9UJV9 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
DDX41Q9UJV9 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
DDX41Q9UJV9 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC22.05■■□□□ 1.12
DDX41Q9UJV9 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
DDX41Q9UJV9 DUT-205ENST00000558813 769 ntTSL 2 BASIC22.05■■□□□ 1.12
DDX41Q9UJV9 P4HB-223ENST00000576390 439 ntTSL 4 BASIC22.05■■□□□ 1.12
DDX41Q9UJV9 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC22.05■■□□□ 1.12
DDX41Q9UJV9 AC005363.2-201ENST00000618631 242 ntBASIC22.05■■□□□ 1.12
DDX41Q9UJV9 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
DDX41Q9UJV9 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
DDX41Q9UJV9 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
DDX41Q9UJV9 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
DDX41Q9UJV9 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
DDX41Q9UJV9 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC22.05■■□□□ 1.12
DDX41Q9UJV9 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
DDX41Q9UJV9 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
DDX41Q9UJV9 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
DDX41Q9UJV9 CRAT-202ENST00000393384 973 ntTSL 2 BASIC22.04■■□□□ 1.12
DDX41Q9UJV9 TMPOP1-202ENST00000424642 1267 ntBASIC22.04■■□□□ 1.12
DDX41Q9UJV9 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
DDX41Q9UJV9 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
DDX41Q9UJV9 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
DDX41Q9UJV9 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC22.04■■□□□ 1.12
DDX41Q9UJV9 AC130371.2-201ENST00000619443 611 ntBASIC22.04■■□□□ 1.12
DDX41Q9UJV9 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
DDX41Q9UJV9 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
DDX41Q9UJV9 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
DDX41Q9UJV9 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
DDX41Q9UJV9 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC22.04■■□□□ 1.12
DDX41Q9UJV9 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC22.04■■□□□ 1.12
DDX41Q9UJV9 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
DDX41Q9UJV9 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC22.04■■□□□ 1.12
DDX41Q9UJV9 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
DDX41Q9UJV9 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC22.04■■□□□ 1.12
DDX41Q9UJV9 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC22.04■■□□□ 1.12
DDX41Q9UJV9 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 PRR31-201ENST00000371629 978 ntTSL 2 BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 GRAMD4P8-201ENST00000605465 1115 ntBASIC22.03■■□□□ 1.12
DDX41Q9UJV9 DGCR10-201ENST00000609839 495 ntBASIC22.03■■□□□ 1.12
DDX41Q9UJV9 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 MOK-225ENST00000522867 1883 ntTSL 5 BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC22.03■■□□□ 1.12
DDX41Q9UJV9 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
DDX41Q9UJV9 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC22.02■■□□□ 1.12
DDX41Q9UJV9 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC22.02■■□□□ 1.12
DDX41Q9UJV9 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
DDX41Q9UJV9 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
DDX41Q9UJV9 AC005521.1-201ENST00000393351 872 ntBASIC22.02■■□□□ 1.12
DDX41Q9UJV9 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC22.02■■□□□ 1.12
DDX41Q9UJV9 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
DDX41Q9UJV9 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC22.02■■□□□ 1.12
DDX41Q9UJV9 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC22.02■■□□□ 1.12
DDX41Q9UJV9 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC22.02■■□□□ 1.12
DDX41Q9UJV9 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC22.02■■□□□ 1.12
DDX41Q9UJV9 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC22.02■■□□□ 1.12
DDX41Q9UJV9 AP005242.2-201ENST00000580065 1175 ntBASIC22.02■■□□□ 1.12
DDX41Q9UJV9 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC22.02■■□□□ 1.12
DDX41Q9UJV9 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC22.02■■□□□ 1.12
DDX41Q9UJV9 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC22.02■■□□□ 1.12
DDX41Q9UJV9 AC092865.7-201ENST00000641832 219 ntBASIC22.02■■□□□ 1.12
DDX41Q9UJV9 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC22.02■■□□□ 1.12
DDX41Q9UJV9 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
DDX41Q9UJV9 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC22.02■■□□□ 1.12
DDX41Q9UJV9 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
DDX41Q9UJV9 KRT18P22-201ENST00000402024 1347 ntBASIC22.02■■□□□ 1.12
DDX41Q9UJV9 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC22.02■■□□□ 1.12
DDX41Q9UJV9 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.11
DDX41Q9UJV9 AL162377.1-201ENST00000618844 1793 ntBASIC22.02■■□□□ 1.11
DDX41Q9UJV9 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC22.01■■□□□ 1.11
DDX41Q9UJV9 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC22.01■■□□□ 1.11
DDX41Q9UJV9 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
DDX41Q9UJV9 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC22.01■■□□□ 1.11
DDX41Q9UJV9 AP001271.2-201ENST00000624018 1556 ntBASIC22.01■■□□□ 1.11
DDX41Q9UJV9 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
DDX41Q9UJV9 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms