Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIMD1Q9UGP4 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20■□□□□ 0.79
LIMD1Q9UGP4 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
LIMD1Q9UGP4 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
LIMD1Q9UGP4 AP000523.1-201ENST00000398242 1049 ntBASIC20■□□□□ 0.79
LIMD1Q9UGP4 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20■□□□□ 0.79
LIMD1Q9UGP4 AC246785.2-201ENST00000432512 513 ntBASIC20■□□□□ 0.79
LIMD1Q9UGP4 TSPY21P-201ENST00000433481 731 ntBASIC20■□□□□ 0.79
LIMD1Q9UGP4 TSPY23P-201ENST00000440136 739 ntBASIC20■□□□□ 0.79
LIMD1Q9UGP4 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC20■□□□□ 0.79
LIMD1Q9UGP4 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20■□□□□ 0.79
LIMD1Q9UGP4 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIMD1Q9UGP4 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIMD1Q9UGP4 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20■□□□□ 0.79
LIMD1Q9UGP4 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIMD1Q9UGP4 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
LIMD1Q9UGP4 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20■□□□□ 0.79
LIMD1Q9UGP4 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20■□□□□ 0.79
LIMD1Q9UGP4 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIMD1Q9UGP4 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20■□□□□ 0.79
LIMD1Q9UGP4 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 GCSHP2-201ENST00000560971 527 ntBASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 LINC01006-201ENST00000333319 2292 ntBASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.99■□□□□ 0.79
LIMD1Q9UGP4 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LIMD1Q9UGP4 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIMD1Q9UGP4 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
LIMD1Q9UGP4 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
LIMD1Q9UGP4 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LIMD1Q9UGP4 AC007225.1-201ENST00000566331 1836 ntBASIC19.98■□□□□ 0.79
LIMD1Q9UGP4 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.98■□□□□ 0.79
LIMD1Q9UGP4 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIMD1Q9UGP4 STARP1-201ENST00000397973 869 ntBASIC19.98■□□□□ 0.79
LIMD1Q9UGP4 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.98■□□□□ 0.79
LIMD1Q9UGP4 KLK8-205ENST00000593490 267 ntTSL 3 BASIC19.98■□□□□ 0.79
LIMD1Q9UGP4 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.98■□□□□ 0.79
LIMD1Q9UGP4 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIMD1Q9UGP4 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.98■□□□□ 0.79
LIMD1Q9UGP4 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIMD1Q9UGP4 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIMD1Q9UGP4 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
LIMD1Q9UGP4 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIMD1Q9UGP4 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIMD1Q9UGP4 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LIMD1Q9UGP4 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
LIMD1Q9UGP4 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
LIMD1Q9UGP4 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.97■□□□□ 0.79
LIMD1Q9UGP4 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.97■□□□□ 0.79
LIMD1Q9UGP4 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LIMD1Q9UGP4 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIMD1Q9UGP4 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LIMD1Q9UGP4 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
LIMD1Q9UGP4 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIMD1Q9UGP4 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIMD1Q9UGP4 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.97■□□□□ 0.79
LIMD1Q9UGP4 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.97■□□□□ 0.79
LIMD1Q9UGP4 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC19.97■□□□□ 0.79
LIMD1Q9UGP4 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.97■□□□□ 0.79
LIMD1Q9UGP4 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.97■□□□□ 0.79
LIMD1Q9UGP4 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.97■□□□□ 0.79
LIMD1Q9UGP4 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19.97■□□□□ 0.79
LIMD1Q9UGP4 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
LIMD1Q9UGP4 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.97■□□□□ 0.79
LIMD1Q9UGP4 AC092119.3-201ENST00000612618 583 ntBASIC19.97■□□□□ 0.79
LIMD1Q9UGP4 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
LIMD1Q9UGP4 AC006128.1-201ENST00000624704 1661 ntBASIC19.97■□□□□ 0.79
LIMD1Q9UGP4 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LIMD1Q9UGP4 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
LIMD1Q9UGP4 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.96■□□□□ 0.79
LIMD1Q9UGP4 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.96■□□□□ 0.79
LIMD1Q9UGP4 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LIMD1Q9UGP4 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LIMD1Q9UGP4 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.96■□□□□ 0.79
LIMD1Q9UGP4 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIMD1Q9UGP4 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIMD1Q9UGP4 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
LIMD1Q9UGP4 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
LIMD1Q9UGP4 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIMD1Q9UGP4 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LIMD1Q9UGP4 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms